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Many developmental processes in biology utilize Notch-Delta signaling to construct an ordered pattern of cellular differentiation. This signaling modality is based on nearest-neighbor contact, as opposed to the more familiar mechanism…

Molecular Networks · Quantitative Biology 2020-07-14 Eial Teomy , David A. Kessler , Herbert Levine

Several commonly observed physical and biological systems are arranged in shapes that closely resemble an honeycomb cluster, that is, a tessellation of the plane by regular hexagons. Although these shapes are not always the direct product…

Optimization and Control · Mathematics 2025-01-10 Marco Caroccia , Kenneth DeMason , Francesco Maggi

We report experimental observations of hexaroll chaos in inclined layer convection. Two separate populations of defect complexes characterize the defect turbulent state, one the classical penta-hepta defect of hexagonal planform patterns,…

Pattern Formation and Solitons · Physics 2007-05-23 W. Brunner , J. McCoy , W. Pesch , E. Bodenschatz

Many physical systems involve two types of orientational order, which are coupled together. For example, ferroelectric nematic liquid crystals have coupled polar and nematic order, and tilted hexatic phases have coupled polar and hexatic…

Soft Condensed Matter · Physics 2026-03-16 Lincoln Paik , Jonathan V. Selinger

Stable array of point defects was generated in nematic liquid crystal. Point defects with topological charge of +1 and -1 (hedgehogs) were generated in vertically aligned liquid crystal cell. The hedgehogs were arranged in square or…

Soft Condensed Matter · Physics 2019-06-18 Jieh-Wen Tsung

We apply tools from topological data analysis to two mathematical models inspired by biological aggregations such as bird flocks, fish schools, and insect swarms. Our data consists of numerical simulation output from the models of Vicsek…

Quantitative Methods · Quantitative Biology 2018-11-21 Chad M. Topaz , Lori Ziegelmeier , Tom Halverson

Aggregation is a common behavior by which groups of organisms arrange into cohesive groups. Whether suspended in the air (like honey bee clusters), built on the ground (such as army ant bridges), or immersed in water (such as sludge worm…

Populations and Evolution · Quantitative Biology 2022-06-23 O. Shishkov , O. Peleg

We consider collective dynamics of self-propelling particles in two dimensions. They can align themselves according to the direction of propulsion of their neighbours, together with a random perturbation (i.e. rotational fluctuation). They…

Soft Condensed Matter · Physics 2019-04-01 Shubhashis Rana , Md. Samsuzzaman , Arnab Saha

Motivated by the study of social insects, we introduce a stochastic model based on interacting particle systems in order to understand the effect of communication on the division of labor. Members of the colony are located on the vertex set…

Probability · Mathematics 2016-01-07 Alesandro Arcuri , Nicolas Lanchier

Highly periodic structures are often said to convey the beauty of nature. However, most material properties are strongly influenced by the defects they contain. On the mesoscopic scale, molecular self-assembly exemplifies this interplay;…

We investigate active particles that exhibit long-range interactions only restricted by a field of view, which is characterized by an angle $\beta$. We show that constraining attractive interactions to a field of view leads to the emergence…

Biological Physics · Physics 2026-04-03 Edgardo Brigatti , Fernando Peruani

We present a model for the growth of the transportation network inside nests of the social insect subfamily Termitinae (Isoptera, termitidae). These nests consist of large chambers (nodes) connected by tunnels (edges). The model based on…

Populations and Evolution · Quantitative Biology 2015-12-11 Young-Ho Eom , Andrea Perna , Santo Fortunato , Eric Darrouzet , Guy Theraulaz , Christian Jost

The homotopy theory of topological defects is a powerful tool for organizing and unifying many ideas across a broad range of physical systems. Recently, experimental progress has been made in controlling and measuring colloidal inclusions…

Soft Condensed Matter · Physics 2012-04-10 Gareth P. Alexander , Bryan Gin-ge Chen , Elisabetta A. Matsumoto , Randall D. Kamien

Colloidal particles in polymer solutions and functionalized nanoparticles often exhibit short-range attraction coupled with long-range repulsion (SALR) leading to the spontaneous formation of symmetric patterns. Chiral nanostructures formed…

Soft Condensed Matter · Physics 2019-09-19 Jakub Pekalski , Eldar Bildanov , Alina Ciach

Social insects provide an excellent platform to investigate flow of information in regulatory systems since their successful social organization is essentially achieved by effective information transfer through complex connectivity patterns…

Populations and Evolution · Quantitative Biology 2014-03-19 Anjan K. Nandi , Annagiri Sumana , Kunal Bhattacharya

To enlighten the nature of the order-disorder and order-order transitions in block copolymer melts confined in narrow capillaries we analyze peculiarities of the conventional Landau weak crystallization theory of systems confined to…

Soft Condensed Matter · Physics 2011-11-09 Igor Erukhimovich , Albert Johner

General topological principles how to transfer the planar orders onto a sphere are considered. Formation of extended topological defects (ETDs), which have a reconstructed inner structure surrounded by perfect initial order, is discussed.…

Soft Condensed Matter · Physics 2013-10-01 D. S. Roshal , C. Yu. Petrov , A. E. Myasnikova , S. B. Rochal

The graphene-graphite relationship in structural geometry is a basic principle to predict novel two-dimensional (2D) materials. Here, we demonstrate that this is not the case in binary metallic systems. We use the Bayesian optimization…

Materials Science · Physics 2022-02-10 Shota Ono

Let $\mathfrak{P}$ be a topological property. We study the relation between the order structure of the set of all $\mathfrak{P}$-extensions of a completely regular space $X$ with compact remainder (partially ordered by the standard partial…

General Topology · Mathematics 2015-02-17 M. R. Koushesh

Packing problems have been of great interest in many diverse contexts for many centuries. The optimal packing of identical objects has been often invoked to understand the nature of low temperature phases of matter. In celebrated work,…

Statistical Mechanics · Physics 2009-11-13 Antonio Trovato , Trinh X. Hoang , Jayanth R. Banavar , Amos Maritan