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A susceptible-exposed-infected-removed (SEIR) model assumes spatial-/time-varying coefficients to model the effect of non-pharmaceutical interventions (NPIs) on the regional and temporal distribution of COVID-19 disease epidemics. A…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-05 Huan Zhou , Ralf Schneider

Treatment protocols, disease understanding, and viral characteristics changed over the course of the COVID-19 pandemic; as a result, the risks associated with patient comorbidities and biomarkers also changed. We add to the conversation…

Machine Learning · Computer Science 2022-11-17 Benjamin Lengerich , Mark E. Nunnally , Yin Aphinyanaphongs , Rich Caruana

In the present article a mathematical model is proposed to research the current coronavirus outbreak (SARS-CoV-2) in Paraguay, describing the multiple transmission paths in the infection dynamics, following the susceptible, exposed,…

Populations and Evolution · Quantitative Biology 2020-06-02 Juan A. Gonzalez Cuevas

In large observational studies, the case-cohort design is commonly used to reduce the cost associated with covariate measurement. For survival outcomes, literature has suggested that the restricted mean survival time (RMST) be a more…

Methodology · Statistics 2026-05-08 Andy Ni , Wei-En Lu , Bo Lu

Distribution shift in medical imaging remains a central bottleneck for the clinical translation of medical AI. Failure to address it can lead to severe performance degradation in unseen environments and exacerbate health inequities.…

Computer Vision and Pattern Recognition · Computer Science 2026-04-08 Yizhou Fang , Pujin Cheng , Yixiang Liu , Xiaoying Tang , Longxi Zhou

COVID-19 pandemic is an ongoing global pandemic which has caused unprecedented disruptions in the public health sector and global economy. The virus, SARS-CoV-2 is responsible for the rapid transmission of coronavirus disease. Due to its…

We present a new mathematical model to explicitly capture the effects that the three restriction measures: the lockdown date and duration, social distancing and masks, and, schools and border closing, have in controlling the spread of…

Populations and Evolution · Quantitative Biology 2020-08-25 Liam Dowling Jones , Malik Magdon-Ismail , Laura Mersini-Houghton , Steven Meshnick

Discrete biomarkers derived as cell densities or counts from tissue microarrays and immunostaining are widely used to study immune signatures in relation to survival outcomes in cancer. Although routinely collected, these signatures are not…

In this work, we investigate a modified version of the classical SIS model that incorporates hospitalization for treatment and disease-induced mortality, aiming to more accurately capture the dynamics relevant to health insurance pricing…

Dynamical Systems · Mathematics 2026-01-06 Tuan Chau Do , Tien Thinh Le , Nguyen Trong Hieu , Manh Tuan Hoang

OBJECTIVES: to describe the first wave of the COVID-19 pandemic with a focus on undetected cases and to evaluate different post-lockdown scenarios. DESIGN: the study introduces a SEIR compartmental model, taking into account the…

Populations and Evolution · Quantitative Biology 2021-06-03 Nicola Picchiotti , Monica Salvioli , Elena Zanardini , Francesco Missale

Pooled testing offers an efficient solution to the unprecedented testing demands of the COVID-19 pandemic, although with potentially lower sensitivity and increased costs to implementation in some settings. Assessments of this trade-off…

Applications · Statistics 2021-07-13 Saskia Comess , Hannah Wang , Susan Holmes , Claire Donnat

A study of changes in the transmission of a disease, in particular, a new disease like COVID-19, requires very flexible models which can capture, among others, the effects of non-pharmacological and pharmacological measures, changes in…

The global COVID-19 pandemic has caused more than six million deaths worldwide. Medicalized hotels were established in Taiwan as quarantine facilities for COVID-19 patients with no or mild symptoms. Due to limited medical care available at…

Machine Learning · Computer Science 2023-01-05 Jun-En Ding , Chih-Ho Hsu , Kuan-Chia Ling , Ling Chen , Fang-Ming Hung

Compartmental models, especially the Susceptible-Infected-Removed (SIR) model, have long been used to understand the behaviour of various diseases. Allowing parameters, such as the transmission rate, to be time-dependent functions makes it…

Methodology · Statistics 2024-09-27 Son Luu , Edward Susko , Lam Si Tung Ho

Coronavirus disease (COVID-19) which is caused by SARS-COV2 has become a pandemic. This disease is highly infectious and potentially fatal, causing a global public health concern. To contain the spread of COVID-19, governments are adopting…

Physics and Society · Physics 2020-06-22 Sayantari Ghosh , Saumik Bhattacharya

Count data with excessive zeros are often encountered when modelling infectious disease occurrence. The degree of zero inflation can vary over time due to non-epidemic periods as well as by age group or region. The existing endemic-epidemic…

Methodology · Statistics 2023-09-14 Junyi Lu , Sebastian Meyer

The Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has rapidly spread into a global pandemic. A form of pneumonia, presenting as opacities with in a patient's lungs, is the most common presentation associated with this virus,…

Image and Video Processing · Electrical Eng. & Systems 2020-07-10 Keegan Lensink , Issam Laradji , Marco Law , Paolo Emilio Barbano , Savvas Nicolaou , William Parker , Eldad Haber

The process of infection of a host is complex, influenced by factors such as microbial variation within and between hosts as well as differences in dose across hosts. This study uses dose-response and within-host microbial infection models…

Populations and Evolution · Quantitative Biology 2025-04-10 Francisco J. Perez-Reche

We study a symmetric two-disease SIR co-infection model on networks in which co-infected individuals recover at a rate distinct from that of single infections. The model explicitly represents all co-infection states and features absorbing…

Statistical Mechanics · Physics 2025-12-22 Gerardo Palafox-Castillo , Ericka Fabiola Vázquez-Alcalá , Arturo Berrones-Santos

Causal inference from electronic health records (EHR) is fundamentally limited by unmeasured confounding: critical clinical states such as frailty, goals of care, and mental status are documented in free-text notes but absent from…

Machine Learning · Computer Science 2026-04-22 Lei Liu , Jialin Chen , Kathy Macropol