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Related papers: Knowledge Graphs for the Life Sciences: Recent Dev…

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Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

Sustainable agricultural production aligns with several sustainability goals established by the United Nations (UN). However, there is a lack of studies that comprehensively examine sustainable agricultural practices across various products…

Besides entity-centric knowledge, usually organized as Knowledge Graph (KG), events are also an essential kind of knowledge in the world, which trigger the spring up of event-centric knowledge representation form like Event KG (EKG). It…

Machine Learning · Computer Science 2022-06-14 Saiping Guan , Xueqi Cheng , Long Bai , Fujun Zhang , Zixuan Li , Yutao Zeng , Xiaolong Jin , Jiafeng Guo

With knowledge graphs (KGs) at the center of numerous applications such as recommender systems and question answering, the need for generalized pipelines to construct and continuously update such KGs is increasing. While the individual…

Artificial Intelligence · Computer Science 2024-09-05 Marvin Hofer , Daniel Obraczka , Alieh Saeedi , Hanna Köpcke , Erhard Rahm

Graph neural networks (GNN) have shown outstanding applications in many fields where data is fundamentally represented as graphs (e.g., chemistry, biology, recommendation systems). In this vein, communication networks comprise many…

Knowledge graphs represent concepts (e.g., people, places, events) and their semantic relationships. As a data structure, they underpin a digital information system, support users in resource discovery and retrieval, and are useful for…

Digital Libraries · Computer Science 2018-09-13 Bernhard Haslhofer , Antoine Isaac , Rainer Simon

Graphs are structured data that models complex relations between real-world entities. Heterophilic graphs, where linked nodes are prone to be with different labels or dissimilar features, have recently attracted significant attention and…

Social and Information Networks · Computer Science 2025-03-21 Chenghua Gong , Yao Cheng , Jianxiang Yu , Can Xu , Caihua Shan , Siqiang Luo , Xiang Li

Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is…

Computation and Language · Computer Science 2023-04-24 Ayoub Harnoune , Maryem Rhanoui , Mounia Mikram , Siham Yousfi , Zineb Elkaimbillah , Bouchra El Asri

Knowledge graphs (KGs) such as DBpedia, Freebase, YAGO, Wikidata, and NELL were constructed to store large-scale, real-world facts as (subject, predicate, object) triples -- that can also be modeled as a graph, where a node (a subject or an…

Databases · Computer Science 2023-05-25 Arijit Khan

This book collects the lectures about graph theory and its applications which were given to students of mathematical departments of Moscow State University and Peking University. Graph theory is a very wide field with a lot of applications…

Social and Information Networks · Computer Science 2024-10-15 Mikhail Tuzhilin , Dong Zhang

Knowledge graphs in manufacturing and production aim to make production lines more efficient and flexible with higher quality output. This makes knowledge graphs attractive for companies to reach Industry 4.0 goals. However, existing…

Artificial Intelligence · Computer Science 2024-08-13 Georg Buchgeher , David Gabauer , Jorge Martinez-Gil , Lisa Ehrlinger

Biomedical knowledge graphs (KGs) hold rich information on entities such as diseases, drugs, and genes. Predicting missing links in these graphs can boost many important applications, such as drug design and repurposing. Recent work has…

Computation and Language · Computer Science 2021-09-22 Rahul Nadkarni , David Wadden , Iz Beltagy , Noah A. Smith , Hannaneh Hajishirzi , Tom Hope

Graph-structured data are an integral part of many application domains, including chemoinformatics, computational biology, neuroimaging, and social network analysis. Over the last two decades, numerous graph kernels, i.e. kernel functions…

Machine Learning · Computer Science 2021-03-10 Karsten Borgwardt , Elisabetta Ghisu , Felipe Llinares-López , Leslie O'Bray , Bastian Rieck

Knowledge graphs (KGs) have recently been used for many tools and applications, making them rich resources in structured format. However, in the real world, KGs grow due to the additions of new knowledge in the form of entities and…

Artificial Intelligence · Computer Science 2024-09-10 Mehwish Alam , Genet Asefa Gesese , Pierre-Henri Paris

Knowledge graphs (KGs) have shown to be an important asset of large companies like Google and Microsoft. KGs play an important role in providing structured and semantically rich information, making them available to people and machines, and…

Databases · Computer Science 2020-05-05 Elwin Huaman , Elias Kärle , Dieter Fensel

Graphs are commonly used to characterise interactions between objects of interest. Because they are based on a straightforward formalism, they are used in many scientific fields from computer science to historical sciences. In this paper,…

Machine Learning · Statistics 2015-06-24 Pierre Latouche , Fabrice Rossi

Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scientific knowledge. Advances in artificial intelligence,…

Machine Learning · Computer Science 2025-02-07 Michelle M. Li , Kexin Huang , Marinka Zitnik

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a…

Machine Learning · Computer Science 2024-06-05 Wenqi Fan , Shijie Wang , Jiani Huang , Zhikai Chen , Yu Song , Wenzhuo Tang , Haitao Mao , Hui Liu , Xiaorui Liu , Dawei Yin , Qing Li

Computing in the life sciences has undergone a transformative evolution, from early computational models in the 1950s to the applications of artificial intelligence (AI) and machine learning (ML) seen today. This paper highlights key…

Other Quantitative Biology · Quantitative Biology 2024-06-21 Samuel A. Donkor , Matthew E. Walsh , Alexander J. Titus

With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse…

Machine Learning · Computer Science 2021-11-09 David Ahmedt-Aristizabal , Mohammad Ali Armin , Simon Denman , Clinton Fookes , Lars Petersson
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