English
Related papers

Related papers: Knowledge Graphs for the Life Sciences: Recent Dev…

200 papers

Knowledge graphs (KGs) are a powerful approach for integrating heterogeneous data and making inferences in biology and many other domains, but a coherent solution for constructing, exchanging, and facilitating the downstream use of…

The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…

Other Quantitative Biology · Quantitative Biology 2025-01-24 Himanshu Buckchash , Gyanendra Kumar Verma , Dilip K. Prasad

Knowledge graphs (KGs) are widely used for representing and organizing structured knowledge in diverse domains. However, the creation and upkeep of KGs pose substantial challenges. Developing a KG demands extensive expertise in data…

Information Retrieval · Computer Science 2023-09-19 Samira Babalou , Sheeba Samuel , Birgitta König-Ries

Knowledge graphs (KGs) have become the preferred technology for representing, sharing and adding knowledge to modern AI applications. While KGs have become a mainstream technology, the RDF/SPARQL-centric toolset for operating with them at…

Knowledge graphs are an efficient method for representing and connecting information across various concepts, useful in reasoning, question answering, and knowledge base completion tasks. They organize data by linking points, enabling…

Artificial Intelligence · Computer Science 2025-02-25 Saher Mohamed , Kirollos Farah , Abdelrahman Lotfy , Kareem Rizk , Abdelrahman Saeed , Shahenda Mohamed , Ghada Khouriba , Tamer Arafa

The rash development of knowledge graph research has brought big driving force to its application in many areas, including the medicine and healthcare domain. However, we have found that the application of some major information processing…

Artificial Intelligence · Computer Science 2026-01-23 Chuanqing Wang , Zhenmin Zhao , Shanshan Du , Chaoqun Fei , Songmao Zhang , Ruqian Lu

Knowledge Graph (KG) is a graph based data structure to represent facts of the world where nodes represent real world entities or abstract concept and edges represent relation between the entities. Graph as representation for knowledge has…

Social and Information Networks · Computer Science 2024-04-16 Manita Pote

Knowledge organization, infrastructure, and knowledge-based activities are all subjects that help in the creation of business strategies for the new enterprise. In this paper, the first basics of knowledge-based systems are studied.…

Computers and Society · Computer Science 2020-01-28 Mahdi Bohlouli , Patrick Uhr , Fabian Merges , Sanaz Mohammad Hassani , Madjid Fathi

In this paper, we present a survey of the use of graph theoretical techniques in Biology. In particular, we discuss recent work on identifying and modelling the structure of bio-molecular networks, as well as the application of centrality…

Molecular Networks · Quantitative Biology 2007-05-23 Oliver Mason , Mark Verwoerd

In this essay we discuss the recent trends in visual analysis and exploration of Knowledge Graphs, particularly in conjunction with Knowledge Graph Embedding techniques. We present an overview of the current state of visualization…

Information Retrieval · Computer Science 2024-12-10 Davide Riva , Cristina Rossetti

Biological systems are governed by structured molecular interactions, where pathways, regulatory circuits, and functional gene relationships shape cellular behavior and disease progression. Much of this knowledge is naturally represented as…

Machine Learning · Computer Science 2026-05-26 Yuwei Xue , Sakib Mostafa , James Zou , Joseph Liao , Maximilian Diehn , Ash A. Alizadeh , Lei Xing , Md. Tauhidul Islam

Analysing research trends and predicting their impact on academia and industry is crucial to gain a deeper understanding of the advances in a research field and to inform critical decisions about research funding and technology adoption. In…

Digital Libraries · Computer Science 2021-06-25 Angelo Salatino , Andrea Mannocci , Francesco Osborne

The deployment of various networks (e.g., Internet of Things [IoT] and mobile networks), databases (e.g., nutrition tables and food compositional databases), and social media (e.g., Instagram and Twitter) generates huge amounts of food…

Computer Vision and Pattern Recognition · Computer Science 2022-05-17 Weiqing Min , Chunlin Liu , Leyi Xu , Shuqiang Jiang

This poster paper describes the ongoing research project for the creation of a use-case-driven Knowledge Graph resource tailored to the needs of teaching education in Knowledge Graphs (KGs). We gather resources related to KG courses from…

Information Retrieval · Computer Science 2024-11-05 Eleni Ilkou , Ernesto Jiménez-Ruiz

Knowledge Graph Completion has been increasingly adopted as a useful method for helping address several tasks in biomedical research, such as drug repurposing or drug-target identification. To that end, a variety of datasets and Knowledge…

Machine Learning · Computer Science 2025-11-07 Alberto Cattaneo , Stephen Bonner , Thomas Martynec , Edward Morrissey , Carlo Luschi , Ian P Barrett , Daniel Justus

Graphs are widely used as a popular representation of the network structure of connected data. Graph data can be found in a broad spectrum of application domains such as social systems, ecosystems, biological networks, knowledge graphs, and…

Machine Learning · Computer Science 2021-05-04 Feng Xia , Ke Sun , Shuo Yu , Abdul Aziz , Liangtian Wan , Shirui Pan , Huan Liu

Knowledge Graphs (KGs) have been used to organize large datasets into structured, interconnected information, enhancing data analytics across various fields. In the legislative context, one potential natural application of KGs is modeling…

Databases · Computer Science 2024-09-23 Andrea Colombo

Knowledge graphs are increasingly used in a plethora of downstream tasks or in the augmentation of statistical models to improve factuality. However, social biases are engraved in these representations and propagate downstream. We conducted…

Computation and Language · Computer Science 2024-06-07 Angelie Kraft , Ricardo Usbeck

Biomedical datasets are often modeled as knowledge graphs (KGs) because they capture the multi-relational, heterogeneous, and dynamic natures of biomedical systems. KG completion (KGC), can, therefore, help researchers make predictions to…

Artificial Intelligence · Computer Science 2023-07-18 Lauren Nicole DeLong , Ramon Fernández Mir , Zonglin Ji , Fiona Niamh Coulter Smith , Jacques D. Fleuriot

Vocabularies are used for modeling data in Knowledge Graphs (KG) like the Linked Open Data Cloud and Wikidata. During their lifetime, the vocabularies of the KGs are subject to changes. New terms are coined, while existing terms are…

Information Retrieval · Computer Science 2017-10-03 Mohammad Abdel-Qader , Ansgar Scherp