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We demonstrate the ability of statistical data assimilation to identify the measurements required for accurate state and parameter estimation in an epidemiological model for the novel coronavirus disease COVID-19. Our context is an effort…

Populations and Evolution · Quantitative Biology 2020-08-04 Eve Armstrong , Manuela Runge , Jaline Gerardin

The COVID-19 pandemic and its multiple outbreaks have challenged governments around the world. Much of the epidemiological modeling was based on pre-pandemic contact information of the population, which changed drastically due to…

Populations and Evolution · Quantitative Biology 2023-09-15 Santiago Rosa , Manuel Pulido , Juan Ruiz , Tadeo Cocucci

The ongoing COVID-19 pandemic calls for a multi-faceted public health response comprising complementary interventions to control the spread of the disease while vaccines and therapies are developed. Many of these interventions need to be…

Applications · Statistics 2020-08-24 Andres Colubri , Kailash Yadav , Abhishek Jha , Pardis C. Sabeti

We present results of different approaches to model the evolution of the COVID-19 epidemic in Argentina, with a special focus on the megacity conformed by the city of Buenos Aires and its metropolitan area, including a total of 41 districts…

Physics and Society · Physics 2020-07-15 E. Tagliazucchi , P. Balenzuela , M. Travizano , G. B. Mindlin , P. D. Mininni

Researchers have shown that even simple empirical models stemming from biological growth modeling have the potential to provide useful information on the development and severity of ongoing epidemics since they can be employed as tools for…

Populations and Evolution · Quantitative Biology 2020-04-28 Evagoras Xydas , Konstantinos Kostas

Predicting the spread and containment of COVID-19 is a challenge of utmost importance that the broader scientific community is currently facing. One of the main sources of difficulty is that a very limited amount of daily COVID-19 case data…

Machine Learning · Computer Science 2020-04-21 Hanbaek Lyu , Christopher Strohmeier , Georg Menz , Deanna Needell

Accurate forecasts for COVID-19 are necessary for better preparedness and resource management. Specifically, deciding the response over months or several months requires accurate long-term forecasts which is particularly challenging as the…

Populations and Evolution · Quantitative Biology 2020-07-10 Ajitesh Srivastava , Viktor K. Prasanna

Understanding dynamics of an outbreak like that of COVID-19 is important in designing effective control measures. This study aims to develop an agent based model that compares changes in infection progression by manipulating different…

Populations and Evolution · Quantitative Biology 2021-06-24 Anik Burman , Sayak Chatterjee , Pramit Ghosh , Indranil Mukhokadhyay

The COVID-19 pandemic has created unprecedented challenges worldwide. Strained healthcare providers make difficult decisions on patient triage, treatment and care management on a daily basis. Policy makers have imposed social distancing…

We propose a compartmental mathematical model for the spread of the COVID-19 disease, showing its usefulness with respect to the pandemic in Portugal, from the first recorded case in the country till the end of the three states of…

Populations and Evolution · Quantitative Biology 2020-11-30 Ana P. Lemos-Paiao , Cristiana J. Silva , Delfim F. M. Torres

The outbreak of the new virus COVID-19, beyond the human health risks and loss, has caused also very serious problems in a wide range of human activities, including the basic and applied scientific research, mainly that concern world wide…

Physics and Society · Physics 2020-04-16 S. Maltezos

This technical report describes the rationale and technical details for the dynamic causal modelling of mitigated epidemiological outcomes based upon a variety of timeseries data. It details the structure of the underlying convolution or…

Populations and Evolution · Quantitative Biology 2020-11-26 Karl J. Friston , Guillaume Flandin , Adeel Razi

In this paper we create a compartmental, stochastic process model of SARS-CoV-2 transmission, where the process's mean and variance have distinct dynamics. The model is fit to time series data from Washington from January 2020 to March 2021…

Populations and Evolution · Quantitative Biology 2022-05-05 Niket Thakkar , Mike Famulare

This research presents an advanced fractional-order compartmental model designed to delve into the complexities of COVID-19 transmission dynamics, specifically accounting for the influence of environmental pathogens on disease spread. By…

Populations and Evolution · Quantitative Biology 2024-07-09 Moein Khalighi , Faïçal Ndaïrou , Leo Lahti

Computational multi-scale pandemic modelling remains a major and timely challenge. Here we identify specific requirements for a new class of models simulating pandemics across three scales: (1) pathogen evolution, often punctuated by the…

Populations and Evolution · Quantitative Biology 2025-08-04 Quang Dang Nguyen , Sheryl L. Chang , Carl J. E. Suster , Rebecca J. Rockett , Vitali Sintchenko , Tania C. Sorrell , Mikhail Prokopenko

Millions of people have been infected and lakhs of people have lost their lives due to the worldwide ongoing novel Coronavirus (COVID-19) pandemic. It is of utmost importance to identify the future infected cases and the virus spread rate…

Physics and Society · Physics 2021-05-04 Naresh Kumar , Seba Susan

The outbreak of COVID-19 in 2020 has led to a surge in the interest in the mathematical modeling of infectious diseases. Disease transmission may be modeled as compartmental models, in which the population under study is divided into…

Populations and Evolution · Quantitative Biology 2020-10-27 Malú Grave , Alvaro L. G. A. Coutinho

Countries are recording health information on the global spread of COVID-19 using different methods, sometimes changing the rules after a few days. They are all publishing the number of new individuals infected, cured and dead, along with…

Populations and Evolution · Quantitative Biology 2020-12-15 J. M. Calabuig , L. M. García-Raffi , A. García-Valiente , E. A. Sánchez-Pérez

This paper is concerned with nonlinear modeling and analysis of the COVID-19 pandemic currently ravaging the planet. There are two objectives: to arrive at an appropriate model that captures the collected data faithfully, and to use that as…

Populations and Evolution · Quantitative Biology 2020-10-15 C. A. K. Kwuimy , Foad Nazari , Xun Jiao , Pejman Rohani , C. Nataraj

In this paper, a susceptible-infected-removed (SIR) model has been used to track the evolution of the spread of the COVID-19 virus in four countries of interest. In particular, the epidemic model, that depends on some basic characteristics,…

Populations and Evolution · Quantitative Biology 2020-10-28 Ian Cooper , Argha Mondal , Chris G. Antonopoulos