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Genome-scale screening experiments in cancer produce long lists of candidate genes that require extensive interpretation for biological insight and prioritization for follow-up studies. Interrogation of gene lists frequently represents a…
Large parameter space explorations are among the most time consuming yet critically important tasks in many fields of modern research. ExpoCloud enables the researcher to harness cloud compute resources to achieve time and budget-effective…
Graph analytics powers modern intelligent systems such as smart cities, cyber-physical infrastructure, IoT security, and large-scale social networks. As these workloads scale in complexity, their execution in heterogeneous edge-cloud…
Circuit routing has been a historically challenging problem in designing electronic systems such as very large-scale integration (VLSI) and printed circuit boards (PCBs). The main challenge is that connecting a large number of electronic…
Academic Clinical Trial Units frequently face fragmented statistical workflows, leading to duplicated effort, limited collaboration, and inconsistent analytical practices. To address these challenges within an oncology Clinical Trial Unit,…
How to evaluate Large Language Models (LLMs) in code generation remains an open question. Existing benchmarks have two limitations - data leakage and lack of domain-specific evaluation. The former hurts the fairness of benchmarks, and the…
The complicated, evolving landscape of cancer mutations poses a formidable challenge to identify cancer genes among the large lists of mutations typically generated in NGS experiments. The ability to prioritize these variants is therefore…
Endorectal ultrasound (ERUS) is an important imaging modality that provides high reliability for diagnosing the depth and boundary of invasion in colorectal cancer. However, the lack of a large-scale ERUS dataset with high-quality…
Accurate screening of cancer types is crucial for effective cancer detection and precise treatment selection. However, the association between gene expression profiles and tumors is often limited to a small number of biomarker genes. While…
Late diagnosis and high costs are key factors that negatively impact the care of cancer patients worldwide. Although the availability of biological markers for the diagnosis of cancer type is increasing, costs and reliability of tests…
The VASARI MRI feature set is a quantitative system designed to standardise glioma imaging descriptions. Though effective, deriving VASARI is time-consuming and seldom used in clinical practice. This is a problem that machine learning could…
Search-based test generation is guided by feedback from one or more fitness functions - scoring functions that judge solution optimality. Choosing informative fitness functions is crucial to meeting the goals of a tester. Unfortunately,…
Machine unlearning (MU) enables the removal of selected training data from trained models, to address privacy compliance, security, and liability issues in recommender systems. Existing MU benchmarks poorly reflect real-world recommender…
Tests for Esophageal cancer can be expensive, uncomfortable and can have side effects. For many patients, we can predict non-existence of disease with 100% certainty, just using demographics, lifestyle, and medical history information. Our…
Gastric cancer is the fifth most common cancer in the world. At the same time, it is also the fourth most deadly cancer. Early detection of cancer exists as a guide for the treatment of gastric cancer. Nowadays, computer technology has…
Breast Ultrasound plays a vital role in cancer diagnosis as a non-invasive approach with cost-effective. In recent years, with the development of deep learning, many CNN-based approaches have been widely researched in both tumor…
Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of deaths. Automated 3D Breast Ultrasound (ABUS) is a newer approach for breast screening, which has many advantages…
The deployment of Machine Learning models in the cloud has grown among tech companies. Hardware requirements are higher when these models involve Deep Learning techniques, and the cloud providers' costs may be a barrier. We explore…
This paper is a partial reproduction of work by Soltani et al. which presented EvoCrash, a tool for replicating software failures in Java by reproducing stack traces. EvoCrash uses a guided genetic algorithm to generate JUnit test cases…
Retrieval-Augmented Generation (RAG) has proven effective on server infrastructures, but its application on mobile devices is still underexplored due to limited memory and power resources. Existing vector search and RAG solutions largely…