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We study algorithms for solving the problem of constructing a text (long string) from a dictionary (sequence of small strings). The problem has an application in bioinformatics and has a connection with the Sequence assembly method for…

Data Structures and Algorithms · Computer Science 2020-06-01 Kamil Khadiev , Vladislav Remidovskii

In the $k$-cut problem, we want to find the lowest-weight set of edges whose deletion breaks a given (multi)graph into $k$ connected components. Algorithms of Karger \& Stein can solve this in roughly $O(n^{2k})$ time. On the other hand,…

Data Structures and Algorithms · Computer Science 2023-10-13 Anupam Gupta , David G. Harris , Euiwoong Lee , Jason Li

We show how to determine whether a given pattern p of length m occurs in a given text t of length n in ${\tilde O}(\sqrt{n}+\sqrt{m})$\footnote{${\tilde O}$ allows for logarithmic factors in m and $n/m$} time, with inverse polynomial…

Quantum Physics · Physics 2007-05-23 H. Ramesh , V. Vinay

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…

Data Structures and Algorithms · Computer Science 2016-07-14 Diptarka Chakraborty , Elazar Goldenberg , Michal Koucký

Minimum $k$-Section denotes the NP-hard problem to partition the vertex set of a graph into $k$ sets of sizes as equal as possible while minimizing the cut width, which is the number of edges between these sets. When $k$ is an input…

Combinatorics · Mathematics 2017-08-23 Cristina G. Fernandes , Tina Janne Schmidt , Anusch Taraz

We study the parameterized complexity of separating a small set of vertices from a graph by a small vertex-separator. That is, given a graph $G$ and integers $k$, $t$, the task is to find a vertex set $X$ with $|X| \le k$ and $|N(X)| \le…

Data Structures and Algorithms · Computer Science 2013-10-02 Fedor V. Fomin , Petr A. Golovach , Janne H. Korhonen

We report an algorithm for the partition of a line segment according to a given ratio $\nu$. At each step the length distribution among sets of the partition follows a binomial distribution. We call $k$-set to the set of elements with the…

Data Analysis, Statistics and Probability · Physics 2008-11-10 A. I. L. de Araújo , R. F. Soares , J. P. de Oliveira , G. Corso

For an edge-weighted connected undirected graph, the minimum $k$-way cut problem is to find a subset of edges of minimum total weight whose removal separates the graph into $k$ connected components. The problem is NP-hard when $k$ is part…

Data Structures and Algorithms · Computer Science 2008-11-25 Mingyu Xiao , Leizhen Cai , Andrew C. Yao

We study deterministic algorithms for computing graph cuts, with focus on two fundamental problems: balanced sparse cut and $k$-vertex connectivity for small $k$ ($k=O(\polylog n)$). Both problems can be solved in near-linear time with…

Data Structures and Algorithms · Computer Science 2019-10-21 Yu Gao , Jason Li , Danupon Nanongkai , Richard Peng , Thatchaphol Saranurak , Sorrachai Yingchareonthawornchai

Number partitioning is one of the classical NP-hard problems of combinatorial optimization. It has applications in areas like public key encryption and task scheduling. The random version of number partitioning has an "easy-hard" phase…

Disordered Systems and Neural Networks · Physics 2007-05-23 Stephan Mertens

In this paper, we consider a generalized longest common subsequence problem, in which a constraining sequence of length $s$ must be included as a substring and the other constraining sequence of length $t$ must be excluded as a subsequence…

Data Structures and Algorithms · Computer Science 2015-06-02 Daxin Zhu , Lei Wang , Yingjie Wu , Xiaodong Wang

Paper cutting is a simple process of slicing large rolls of paper, jumbo-reels, into various sub-rolls with variable widths based on demands risen by customers. Since the variability is high due to collected various orders into a pool, the…

Other Computer Science · Computer Science 2013-04-09 Mehmet E. Aydin , Osman Taylan

There have been several algorithms designed to optimise matrix multiplication. From schoolbook method with complexity $O(n^3)$ to advanced tensor-based tools with time complexity $O(n^{2.3728639})$ (lowest possible bound achieved), a lot of…

Data Structures and Algorithms · Computer Science 2019-01-30 Shrohan Mohapatra

We consider the problem of binary string reconstruction from the multiset of its substring compositions, i.e., referred to as the substring composition multiset, first introduced and studied by Acharya et al. We introduce a new algorithm…

Information Theory · Computer Science 2023-06-05 Utkarsh Gupta , Hessam Mahdavifar

We obtain two new algorithms for partial fraction decompositions; the first is over algebraically closed fields, and the second is over general fields. These algorithms takes $O(M^2)$ time, where $M$ is the degree of the denominator of the…

Combinatorics · Mathematics 2007-05-23 Guoce Xin

Given a set of $n$ integer-valued coin types and a target value $t$, the well-known change-making problem asks for the minimum number of coins that sum to $t$, assuming an unlimited number of coins in each type. In the more general…

Data Structures and Algorithms · Computer Science 2021-10-07 Timothy M. Chan , Qizheng He

Building on previous work by Cameron et al. in [3], we give a recurrence for computing the number of acyclic orientations of complete $k$-partite graphs, which can be implemented to obtain a dynamic programming algorithm running in time…

Combinatorics · Mathematics 2018-08-09 Veselin Blagoev

Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…

Data Structures and Algorithms · Computer Science 2015-10-01 Srikrishnan Divakaran

Consider the fundamental problem of drawing a simple random sample of size k without replacement from [n] := {1, . . . , n}. Although a number of classical algorithms exist for this problem, we construct algorithms that are even simpler,…

Data Structures and Algorithms · Computer Science 2021-04-13 Daniel Ting

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

Data Structures and Algorithms · Computer Science 2011-03-21 Philip Bille
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