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Tasks that model the relation between pairs of tokens in a string are a vital part of understanding natural language. Such tasks, in general, require exhaustive pair-wise comparisons of tokens, thus having a quadratic runtime complexity in…

Computation and Language · Computer Science 2023-12-13 Tianyu Liu , Afra Amini , Mrinmaya Sachan , Ryan Cotterell

Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…

Data Structures and Algorithms · Computer Science 2016-04-26 Carl Barton , Costas S. Iliopoulos , Solon P. Pissis

We study the problem Symmetric Directed Multicut from a parameterized complexity perspective. In this problem, the input is a digraph $D$, a set of cut requests $C=\{(s_1,t_1),\ldots,(s_\ell,t_\ell)\}$ and an integer $k$, and the task is to…

Data Structures and Algorithms · Computer Science 2022-08-22 Eduard Eiben , Clément Rambaud , Magnus Wahlström

Algorithmic statistics considers the following problem: given a binary string $x$ (e.g., some experimental data), find a "good" explanation of this data. It uses algorithmic information theory to define formally what is a good explanation.…

Machine Learning · Computer Science 2015-09-21 Alexey Milovanov

Repeat finding in strings has important applications in subfields such as computational biology. Surprisingly, all prior work on repeat finding did not consider the constraint on the locality of repeats. In this paper, we propose and study…

Data Structures and Algorithms · Computer Science 2015-01-27 Atalay Mert İleri , M. Oğuzhan Külekci , Bojian Xu

Let $G=(V,E)$ be a graph on $n$ vertices and $R$ be a set of pairs of vertices in $V$ called \emph{requests}. A \emph{multicut} is a subset $F$ of $E$ such that every request $xy$ of $R$ is cut by $F$, \i.e. every $xy$-path of $G$…

Data Structures and Algorithms · Computer Science 2010-11-24 Nicolas Bousquet , Jean Daligault , Stéphan Thomassé

The \textsc{Bipartite Contraction} problem is to decide, given a graph $G$ and a parameter $k$, whether we can can obtain a bipartite graph from $G$ by at most $k$ edge contractions. The fixed-parameter tractability of the problem was shown…

Data Structures and Algorithms · Computer Science 2013-09-05 Sylvain Guillemot , Dániel Marx

We address the problem of counting the number of strings in a collection where a given pattern appears, which has applications in information retrieval and data mining. Existing solutions are in a theoretical stage. We implement these…

Data Structures and Algorithms · Computer Science 2015-10-02 Travis Gagie , Aleksi Hartikainen , Juha Kärkkäinen , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

We study the proportional chore division problem where a protocol wants to divide an undesirable object, called chore, among $n$ different players. The goal is to find an allocation such that the cost of the chore assigned to each player be…

Computer Science and Game Theory · Computer Science 2018-05-09 Alireza Farhadi , MohammadTaghi Hajiaghayi

Perfect Matching-Cut is the problem of deciding whether a graph has a perfect matching that contains an edge-cut. We show that this problem is NP-complete for planar graphs with maximum degree four, for planar graphs with girth five, for…

Combinatorics · Mathematics 2021-11-01 Valentin Bouquet , Christophe Picouleau

We present new, faster pseudopolynomial time algorithms for the $k$-Subset Sum problem, defined as follows: given a set $Z$ of $n$ positive integers and $k$ targets $t_1, \ldots, t_k$, determine whether there exist $k$ disjoint subsets…

Data Structures and Algorithms · Computer Science 2022-01-04 Antonis Antonopoulos , Aris Pagourtzis , Stavros Petsalakis , Manolis Vasilakis

We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…

Data Structures and Algorithms · Computer Science 2017-02-07 Yohei Ueki , Diptarama , Masatoshi Kurihara , Yoshiaki Matsuoka , Kazuyuki Narisawa , Ryo Yoshinaka , Hideo Bannai , Shunsuke Inenaga , Ayumi Shinohara

Monotonicity is a simple yet significant qualitative characteristic. We consider the problem of segmenting a sequence in up to K segments. We want segments to be as monotonic as possible and to alternate signs. We propose a quality metric…

Databases · Computer Science 2009-09-01 Daniel Lemire , Martin Brooks , Yuhong Yan

We consider the problem of inserting a new item into an ordered list of N-1 items. The length of an algorithm is measured by the number of comparisons it makes between the new item and items already on the list. Classically, determining the…

Quantum Physics · Physics 2007-05-23 E. Farhi , J. Goldstone , S. Gutmann , M. Sipser

A decision tree recursively splits a feature space $\mathbb{R}^{d}$ and then assigns class labels based on the resulting partition. Decision trees have been part of the basic machine-learning toolkit for decades. A large body of work treats…

In the trace reconstruction problem, the goal is to reconstruct an unknown string $x$ of length $n$ from multiple traces obtained by passing $x$ through the deletion channel. In the relaxed problem of $approximate$ trace reconstruction, the…

Probability · Mathematics 2021-07-15 Zachary Chase , Yuval Peres

Enumeration algorithms have been one of recent hot topics in theoretical computer science. Different from other problems, enumeration has many interesting aspects, such as the computation time can be shorter than the total output size, by…

Data Structures and Algorithms · Computer Science 2014-07-16 Takeaki Uno

In the bounded-degree cut problem, we are given a multigraph $G=(V,E)$, two disjoint vertex subsets $A,B\subseteq V$, two functions $\mathrm{u}_A, \mathrm{u}_B:V\to \{0,1,\ldots,|E|\}$ on $V$, and an integer $k\geq 0$. The task is to…

Data Structures and Algorithms · Computer Science 2020-12-29 Mingyu Xiao , Hiroshi Nagamochi

This paper considers the one-dimensional cutting stock problem with divisible items, which is a new problem in the cutting stock literature. The problem exists in steel industries. In the new problem, each item can be divided into smaller…

Other Computer Science · Computer Science 2021-07-26 Deniz Tanir , Onur Ugurlu , Asli Guler , Urfat Nuriyev

A string $S[1,n]$ is a power (or tandem repeat) of order $k$ and period $n/k$ if it can decomposed into $k$ consecutive equal-length blocks of letters. Powers and periods are fundamental to string processing, and algorithms for their…

Data Structures and Algorithms · Computer Science 2018-05-28 Golnaz Badkobeh , Gabriele Fici , Simon J. Puglisi
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