Related papers: Classification of normal phylogenetic varieties fo…

If X is a CW complex, one can assign to each point of X an ordered abelian group of finite rank whose subset of positive elements depends continuously on the points of X. A locally trivial bundle which arises in this way we denote by E(X).…

In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…

In this note, we prove that for any finite dimensional vector space $V$ over $\mathbb {C}$, and for a finite cyclic group $G$, the projective variety $\mathbb P(V)/G$ is projectively normal with respect to the descent of $\mathcal…

Phylogenetic trees are binary nonplanar trees with labelled leaves, and plane oriented recursive trees are planar trees with an increasing labelling. Both families are enumerated by double factorials. A bijection is constructed, using the…

For a given set $\mathcal{L}$ of species and a set $\mathcal{T}$ of triplets on $\mathcal{L}$, one wants to construct a phylogenetic network which is consistent with $\mathcal{T}$, i.e which represents all triplets of $\mathcal{T}$. The…

For an abelian variety $A$ over a number field $F$, we prove that the average rank of the quadratic twists of $A$ is bounded, under the assumption that the multiplication-by-3 isogeny on $A$ factors as a composition of 3-isogenies over $F$.…

We classify holomorphic as well as algebraic torus equivariant principal $G$-bundles over a nonsingular toric variety $X$, where $G$ is a complex linear algebraic group. It is shown that any such bundle over an affine, nonsingular toric…

Richardson varieties play an important role in intersection theory and in the geometric interpretation of the Littlewood-Richardson Rule for flag varieties. We discuss three natural generalizations of Richardson varieties which we call…

Let $\mathcal{A}$ be an additive category and let $T\colon \mathcal{A}\rightarrow \mathcal{A}$ be an additive functor equipped with a natural transformation $\omega\colon \mathrm{Id}_{\mathcal{A}}\rightarrow T$. We prove that the homotopy…

Let $A$ be an abelian variety defined over a number field $K$. The number of torsion points that are rational over a finite extension $L$ is bounded polynomially in terms of the degree $[L:K]$ of $L$ over $K$. Under the following three…

Phylogenetic networks are a generalization of evolutionary or phylogenetic trees that are commonly used to represent the evolution of species which cross with one another. A special type of phylogenetic network is an {\em $X$-cactus}, which…

In this paper, we establish a derived Torelli Theorem for twisted abelian varieties. Starting from this, we explore the relation between derived isogenies and classical isogenies. We show that two abelian varieties of dimension $\geq 2$ are…

Phylogenetic networks provide a more general description of evolutionary relationships than rooted phylogenetic trees. One way to produce a phylogenetic network is to randomly place $k$ arcs between the edges of a rooted binary phylogenetic…

In this paper, we prove that the group $\mathrm{Aut}_\mathbb{Q}(X)$ of numerically trivial automorphisms are uniformly bounded for smooth projective threefolds $X$ of general type which either satisfy $q(X)\geq 3$ or have a Gorenstein…

We address an open question of Francis and Steel about phylogenetic networks and trees. They give a polynomial time algorithm to decide if a phylogenetic network, N, is tree-based and pose the problem: given a fixed tree T and network N, is…

We produce twisted derived equivalences between torsors under abelian varieties and their moduli spaces of simple semi-homogeneous sheaves. We also establish the natural converse to this result and show that a large class of twisted derived…

Given an abelian variety $A$ defined over a finite field $k$, we say that $A$ is "cyclic" if its group $A(k)$ of rational points is cyclic. In this paper we give a bijection between cyclic abelian varieties of an ordinary isogeny class…

Equivariant tree models are statistical models used in the reconstruction of phylogenetic trees from genetic data. Here equivariant refers to a symmetry group imposed on the root distribution and on the transition matrices in the model. We…

Rooted phylogenetic networks are used to describe evolutionary histories that contain non-treelike evolutionary events such as hybridization and horizontal gene transfer. In some cases, such histories can be described by a phylogenetic…

One approach to estimating a species tree from a collection of gene trees is to first estimate probabilities of clades from the gene trees, and then to construct the species tree from the estimated clade probabilities. While a greedy…