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Augmentation is an effective alternative to utilize the small amount of labeled protein data. However, most of the existing work focuses on design-ing new architectures or pre-training tasks, and relatively little work has studied data…

Quantitative Methods · Quantitative Biology 2024-03-05 Rui Sun , Lirong Wu , Haitao Lin , Yufei Huang , Stan Z. Li

Medical image data are often limited due to the expensive acquisition and annotation process. Hence, training a deep-learning model with only raw data can easily lead to overfitting. One solution to this problem is to augment the raw data…

Image and Video Processing · Electrical Eng. & Systems 2023-12-19 Xinyue Xu , Yuhan Hsi , Haonan Wang , Xiaomeng Li

Deep learning-based analysis of high-frequency, high-resolution micro-ultrasound data shows great promise for prostate cancer detection. Previous approaches to analysis of ultrasound data largely follow a supervised learning paradigm.…

Image and Video Processing · Electrical Eng. & Systems 2022-11-02 Paul F. R. Wilson , Mahdi Gilany , Amoon Jamzad , Fahimeh Fooladgar , Minh Nguyen Nhat To , Brian Wodlinger , Purang Abolmaesumi , Parvin Mousavi

In recent years, one of the most popular techniques in the computer vision community has been the deep learning technique. As a data-driven technique, deep model requires enormous amounts of accurately labelled training data, which is often…

Computer Vision and Pattern Recognition · Computer Science 2022-10-10 Zihan Yang , Richard O. Sinnott , James Bailey , Qiuhong Ke

Active surveillance (AS) is a suitable management option for newly-diagnosed prostate cancer (PCa), which usually presents low to intermediate clinical risk. Patients enrolled in AS have their tumor closely monitored via longitudinal…

Data Augmentation (DA) is a technique to increase the quantity and diversity of the training data, and by that alleviate overfitting and improve generalisation. However, standard DA produces synthetic data for augmentation with limited…

Computer Vision and Pattern Recognition · Computer Science 2023-07-24 Lorenzo Tronchin , Minh H. Vu , Paolo Soda , Tommy Löfstedt

Current data augmentation techniques and transformations are well suited for improving the size and quality of natural image datasets but are not yet optimized for medical imaging. We hypothesize that sub-optimal data augmentations can…

Image and Video Processing · Electrical Eng. & Systems 2023-01-06 Tara M. Pattilachan , Ugur Demir , Elif Keles , Debesh Jha , Derk Klatte , Megan Engels , Sanne Hoogenboom , Candice Bolan , Michael Wallace , Ulas Bagci

Data augmentation is one of the most effective techniques to improve the generalization performance of deep neural networks. Yet, despite often facing limited data availability in medical image analysis, it is frequently underutilized. This…

Image and Video Processing · Electrical Eng. & Systems 2024-03-18 Adam Tupper , Christian Gagné

The scarcity of labeled data is a major bottleneck for developing accurate and robust deep learning-based models for histopathology applications. The problem is notably prominent for the task of metastasis detection in lymph nodes, due to…

Image and Video Processing · Electrical Eng. & Systems 2021-09-21 Apostolia Tsirikoglou , Karin Stacke , Gabriel Eilertsen , Jonas Unger

AI-assisted imaging made substantial advances in tumor diagnosis and management. However, a major barrier to developing robust oncology foundation models is the scarcity of large-scale, high-quality annotated datasets, which are limited by…

In this work we propose a method for anatomical data augmentation that is based on using slices of computed tomography (CT) examinations that are adjacent to labeled slices as another resource of labeled data for training the network. The…

Computer Vision and Pattern Recognition · Computer Science 2018-07-24 Avi Ben-Cohen , Eyal Klang , Michal Marianne Amitai , Jacob Goldberger , Hayit Greenspan

The PI-CAI (Prostate Imaging: Cancer AI) challenge led to expert-level diagnostic algorithms for clinically significant prostate cancer detection. The algorithms receive biparametric MRI scans as input, which consist of T2-weighted and…

Image and Video Processing · Electrical Eng. & Systems 2024-07-01 Alessa Hering , Sarah de Boer , Anindo Saha , Jasper J. Twilt , Mattias P. Heinrich , Derya Yakar , Maarten de Rooij , Henkjan Huisman , Joeran S. Bosma

Data augmentation (DA) is fundamental against overfitting in large convolutional neural networks, especially with a limited training dataset. In images, DA is usually based on heuristic transformations, like geometric or color…

Computer Vision and Pattern Recognition · Computer Science 2019-09-24 Saypraseuth Mounsaveng , David Vazquez , Ismail Ben Ayed , Marco Pedersoli

Data augmentation (DA) is an essential technique for training state-of-the-art deep learning systems. In this paper, we empirically show data augmentation might introduce noisy augmented examples and consequently hurt the performance on…

Computer Vision and Pattern Recognition · Computer Science 2020-11-25 Chengyue Gong , Dilin Wang , Meng Li , Vikas Chandra , Qiang Liu

Data augmentation (DA) is a crucial technique for enhancing the sample efficiency of visual reinforcement learning (RL) algorithms. Notably, employing simple observation transformations alone can yield outstanding performance without extra…

Machine Learning · Computer Science 2023-10-30 Guozheng Ma , Linrui Zhang , Haoyu Wang , Lu Li , Zilin Wang , Zhen Wang , Li Shen , Xueqian Wang , Dacheng Tao

The data augmentation (DA) algorithm is a simple and powerful tool in statistical computing. In this note basic information theory is used to prove a nontrivial convergence theorem for the DA algorithm.

Information Theory · Computer Science 2009-09-12 Yaming Yu

Despite considerable progress in developing artificial intelligence (AI) algorithms for prostate cancer detection from whole slide images, the clinical applicability of these models remains limited due to variability in pathological…

Tissues and Organs · Quantitative Biology 2024-06-12 T. J. Hart , Chloe Engler Hart , Spencer Hopson , Paul M. Urie , Dennis Della Corte

In this study, a novel method of data augmentation has been presented for the segmentation of placental histological images when the labeled data are scarce. This method generates new realizations of the placenta intervillous morphology…

Image and Video Processing · Electrical Eng. & Systems 2022-10-10 Arash Rabbani , Masoud Babaei , Masoumeh Gharib

Data augmentation is popular in the training of large neural networks; currently, however, there is no clear theoretical comparison between different algorithmic choices on how to use augmented data. In this paper, we take a step in this…

Machine Learning · Computer Science 2022-06-17 Shuo Yang , Yijun Dong , Rachel Ward , Inderjit S. Dhillon , Sujay Sanghavi , Qi Lei

Prostate Cancer (PCa) is a prevalent disease among men, and multi-parametric MRIs offer a non-invasive method for its detection. While MRI-based deep learning solutions have shown promise in supporting PCa diagnosis, acquiring sufficient…

Image and Video Processing · Electrical Eng. & Systems 2024-06-04 Meng Zhou , Amoon Jamzad , Jason Izard , Alexandre Menard , Robert Siemens , Parvin Mousavi