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Magnetic resonance imaging (MRI) is a crucial medical imaging modality. However, long acquisition times remain a significant challenge, leading to increased costs, and reduced patient comfort. Recent studies have shown the potential of…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Amirmohammad Shamaei , Alexander Stebner , Salome , Bosshart , Johanna Ospel , Gouri Ginde , Mariana Bento , Roberto Souza

We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers. Our model consists of an encoder, a decoder and a classifier. The encoder learns a…

Inter-individual variability in fine-grained functional brain organization poses challenges for scalable data analysis and modeling. Functional alignment techniques can help mitigate these individual differences but typically require paired…

Neurons and Cognition · Quantitative Biology 2024-08-02 Haibao Wang , Jun Kai Ho , Fan L. Cheng , Shuntaro C. Aoki , Yusuke Muraki , Misato Tanaka , Yukiyasu Kamitani

Investigating the mapping between visual stimuli and neural responses in the visual cortex contributes to a deeper understanding of biological visual processing mechanisms. Most existing studies characterize this mapping by training models…

Computational Engineering, Finance, and Science · Computer Science 2025-12-01 Xing Gao , Dazhong Rong , Qinming He

In computer-aided diagnosis (CAD) focused on microscopy, denoising improves the quality of image analysis. In general, the accuracy of this process may depend both on the experience of the microscopist and on the equipment sensitivity and…

Image and Video Processing · Electrical Eng. & Systems 2021-05-04 Fabio Hernán Gil Zuluaga , Francesco Bardozzo , Jorge Iván Ríos Patiño , Roberto Tagliaferri

Decoding visual information from time-resolved brain recordings, such as EEG and MEG, plays a pivotal role in real-time brain-computer interfaces. However, existing approaches primarily focus on direct brain-image feature alignment and are…

Human-Computer Interaction · Computer Science 2025-11-12 Chengjian Xu , Yonghao Song , Zelin Liao , Haochuan Zhang , Qiong Wang , Qingqing Zheng

Head magnetic resonance imaging (MRI) data are routinely collected and shared for research under strict regulatory frameworks that require the removal of direct identifiers prior to data release. However, even after skull stripping, brain…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Gaurang Sharma , Harri Polonen , Juha Pajula , Jutta Suksi , Jussi Tohka

Major depressive disorder (MDD) is a prevalent mental disorder associated with complex neurobiological changes that cannot be fully captured using a single imaging modality. The use of multimodal magnetic resonance imaging (MRI) provides a…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Nojod M. Alotaibi , Areej M. Alhothali

The application of deep learning (DL) models to neuroimaging data poses several challenges, due to the high dimensionality, low sample size and complex temporo-spatial dependency structure of these datasets. Even further, DL models act as…

Machine Learning · Computer Science 2019-04-08 Armin W. Thomas , Hauke R. Heekeren , Klaus-Robert Müller , Wojciech Samek

This work presents a novel method of exploring human brain-visual representations, with a view towards replicating these processes in machines. The core idea is to learn plausible computational and biological representations by correlating…

Computer Vision and Pattern Recognition · Computer Science 2020-04-21 Simone Palazzo , Concetto Spampinato , Isaak Kavasidis , Daniela Giordano , Joseph Schmidt , Mubarak Shah

Skull stripping is usually the first step for most brain analysisprocess in magnetic resonance images. A lot of deep learn-ing neural network based methods have been developed toachieve higher accuracy. Since the 3D deep learning…

Image and Video Processing · Electrical Eng. & Systems 2019-10-25 Zhen Liu , Borui Xiao , Yuemeng Li , Yong Fan

We propose a novel method that leverages human fixations to visually decode the image a person has in mind into a photofit (facial composite). Our method combines three neural networks: An encoder, a scoring network, and a decoder. The…

Computer Vision and Pattern Recognition · Computer Science 2021-08-18 Florian Strohm , Ekta Sood , Sven Mayer , Philipp Müller , Mihai Bâce , Andreas Bulling

Decoding functional magnetic resonance imaging (fMRI) signals into text has been a key challenge in the neuroscience community, with the potential to advance brain-computer interfaces and uncover deeper insights into brain mechanisms.…

Neurons and Cognition · Quantitative Biology 2025-06-10 Weikang Qiu , Zheng Huang , Haoyu Hu , Aosong Feng , Yujun Yan , Rex Ying

Decoding visual stimuli from brain recordings aims to deepen our understanding of the human visual system and build a solid foundation for bridging human and computer vision through the Brain-Computer Interface. However, reconstructing…

Computer Vision and Pattern Recognition · Computer Science 2023-03-30 Zijiao Chen , Jiaxin Qing , Tiange Xiang , Wan Lin Yue , Juan Helen Zhou

Brain decoding currently faces significant challenges in individual differences, modality alignment, and high-dimensional embeddings. To address individual differences, researchers often use source subject data, which leads to issues such…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Ganxi Xu , Jinyi Long , Jia Zhang

Visual neural decoding aims to extract and interpret original visual experiences directly from human brain activity. Recent studies have demonstrated the feasibility of decoding visual semantic categories from electroencephalography (EEG)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Hongzhou Chen , Lianghua He , Yihang Liu , Longzhen Yang , Shaohua Shang , MengChu Zhou

Decoding visual stimuli from neural population activity is crucial for understanding the brain and for applications in brain-machine interfaces. However, such biological data is often scarce, particularly in primates or humans, where…

Machine Learning · Computer Science 2025-10-24 Jan Sobotka , Luca Baroni , Ján Antolík

Objective: Joint analysis of multi-subject brain imaging datasets has wide applications in biomedical engineering. In these datasets, some sources belong to all subjects (joint), a subset of subjects (partially-joint), or a single subject…

Machine Learning · Statistics 2020-01-01 Mansooreh Pakravan , Mohammad Bagher Shamsollahi

This paper presents a novel approach towards creating a foundational model for aligning neural data and visual stimuli across multimodal representationsof brain activity by leveraging contrastive learning. We used electroencephalography…

Computer Vision and Pattern Recognition · Computer Science 2024-11-18 Matteo Ferrante , Tommaso Boccato , Grigorii Rashkov , Nicola Toschi

The integration of deep learning and neuroscience has been advancing rapidly, which has led to improvements in the analysis of brain activity and the understanding of deep learning models from a neuroscientific perspective. The…

Neurons and Cognition · Quantitative Biology 2023-06-21 Yu Takagi , Shinji Nishimoto