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Understanding how the brain encodes external stimuli and how these stimuli can be decoded from the measured brain activities are long-standing and challenging questions in neuroscience. In this paper, we focus on reconstructing the complex…

Neurons and Cognition · Quantitative Biology 2022-10-05 Sikun Lin , Thomas Sprague , Ambuj K Singh

As a technology to read brain states from measurable brain activities, brain decoding are widely applied in industries and medical sciences. In spite of high demands in these applications for a universal decoder that can be applied to all…

Machine Learning · Statistics 2015-02-03 Sotetsu Koyamada , Yumi Shikauchi , Ken Nakae , Masanori Koyama , Shin Ishii

Image-based volumetric humans using pixel-aligned features promise generalization to unseen poses and identities. Prior work leverages global spatial encodings and multi-view geometric consistency to reduce spatial ambiguity. However,…

Computer Vision and Pattern Recognition · Computer Science 2022-07-22 Marko Mihajlovic , Aayush Bansal , Michael Zollhoefer , Siyu Tang , Shunsuke Saito

We present a method to segment MRI scans of the human brain into ischemic stroke lesion and normal tissues. We propose a neural network architecture in the form of a standard encoder-decoder where predictions are guided by a spatial…

Image and Video Processing · Electrical Eng. & Systems 2021-09-21 Alex Wong , Allison Chen , Yangchao Wu , Safa Cicek , Alexandre Tiard , Byung-Woo Hong , Stefano Soatto

Deep learning has shown significant potential in diagnosing neurodegenerative diseases from MRI data. However, most existing methods rely heavily on large volumes of labeled data and often yield representations that lack interpretability.…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Fangqi Cheng , Yingying Zhao , Xiaochen Yang

Automated segmentation of anatomical sub-regions with high precision has become a necessity to enable the quantification and characterization of cells/ tissues in histology images. Currently, a machine learning model to analyze…

Image and Video Processing · Electrical Eng. & Systems 2023-06-05 Hosein Barzekar , Hai Ngu , Han Hui Lin , Mohsen Hejrati , Steven Ray Valdespino , Sarah Chu , Baris Bingol , Somaye Hashemifar , Soumitra Ghosh

Despite significant strides in visual quality assessment, the neural mechanisms underlying visual quality perception remain insufficiently explored. This study employed fMRI to examine brain activity during image quality assessment and…

Multimedia · Computer Science 2024-04-30 Yiming Zhang , Ying Hu , Xiongkuo Min , Yan Zhou , Guangtao Zhai

Existing evaluation protocols for brain visual decoding predominantly rely on coarse metrics that obscure inter-model differences, lack neuroscientific foundation, and fail to capture fine-grained visual distinctions. To address these…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Weihao Xia , Cengiz Oztireli

Surface-based analysis of the cerebral cortex is ubiquitous in human neuroimaging with MRI. It is crucial for cortical registration, parcellation, and thickness estimation. Traditionally, these analyses require high-resolution, isotropic…

Image and Video Processing · Electrical Eng. & Systems 2024-09-09 Karthik Gopinath , Douglas N. Greve , Colin Magdamo , Steve Arnold , Sudeshna Das , Oula Puonti , Juan Eugenio Iglesias

Among the most impressive recent applications of neural decoding is the visual representation decoding, where the category of an object that a subject either sees or imagines is inferred by observing his/her brain activity. Even though…

Neural and Evolutionary Computing · Computer Science 2018-11-06 Angeliki Papadimitriou , Nikolaos Passalis , Anastasios Tefas

Due to the lack of paired samples and the low signal-to-noise ratio of functional MRI (fMRI) signals, reconstructing perceived natural images or decoding their semantic contents from fMRI data are challenging tasks. In this work, we…

Computer Vision and Pattern Recognition · Computer Science 2023-05-16 Yulong Liu , Yongqiang Ma , Wei Zhou , Guibo Zhu , Nanning Zheng

We present brat (brain report alignment transformer), a multi-view representation learning framework for brain magnetic resonance imaging (MRI) trained on MRIs paired with clinical reports. Brain MRIs present unique challenges due to the…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Maxime Kayser , Maksim Gridnev , Wanting Wang , Max Bain , Aneesh Rangnekar , Avijit Chatterjee , Aleksandr Petrov , Harini Veeraraghavan , Nathaniel C. Swinburne

Recent research has explored using neural networks to reconstruct undersampled magnetic resonance imaging (MRI) data. Because of the complexity of the artifacts in the reconstructed images, there is a need to develop task-based approaches…

Image and Video Processing · Electrical Eng. & Systems 2022-10-25 Joshua D. Herman , Rachel E. Roca , Alexandra G. O'Neill , Marcus L. Wong , Sajan G. Lingala , Angel R. Pineda

Neural coding is one of the central questions in systems neuroscience for understanding how the brain processes stimulus from the environment, moreover, it is also a cornerstone for designing algorithms of brain-machine interface, where…

Neurons and Cognition · Quantitative Biology 2020-01-29 Yichen Zhang , Shanshan Jia , Yajing Zheng , Zhaofei Yu , Yonghong Tian , Siwei Ma , Tiejun Huang , Jian K. Liu

Deep neural networks have been developed drawing inspiration from the brain visual pathway, implementing an end-to-end approach: from image data to video object classes. However building an fMRI decoder with the typical structure of…

Machine Learning · Statistics 2017-01-10 Michele Svanera , Sergio Benini , Gal Raz , Talma Hendler , Rainer Goebel , Giancarlo Valente

A great improvement to the insight on brain function that we can get from fMRI data can come from effective connectivity analysis, in which the flow of information between even remote brain regions is inferred by the parameters of a…

Neurons and Cognition · Quantitative Biology 2012-08-21 G. Wu , W. Liao , S. Stramaglia , J. Ding , H. Chen , D. Marinazzo

Few-shot learning addresses problems for which a limited number of training examples are available. So far, the field has been mostly driven by applications in computer vision. Here, we are interested in adapting recently introduced…

Machine Learning · Computer Science 2021-05-20 Myriam Bontonou , Giulia Lioi , Nicolas Farrugia , Vincent Gripon

Neuroimaging techniques have shown to be useful when studying the brain's activity. This paper uses Magnetoencephalography (MEG) data, provided by the Human Connectome Project (HCP), in combination with various deep artificial neural…

Machine Learning · Computer Science 2020-07-07 Ismail Alaoui Abdellaoui , Jesus Garcia Fernandez , Caner Sahinli , Siamak Mehrkanoon

Recently, leveraging big data in deep learning has led to significant performance improvements, as confirmed in applications like mental state decoding using fMRI data. However, fMRI datasets remain relatively small in scale, and the…

Neurons and Cognition · Quantitative Biology 2024-10-08 Yuto Nishimura , Masataka Sawayama , Ayumu Yamashita , Hideki Nakayama , Kaoru Amano

The intrication of brain signals drives research that leverages multimodal AI to align brain modalities with visual and textual data for explainable descriptions. However, most existing studies are limited to coarse interpretations, lacking…

Computer Vision and Pattern Recognition · Computer Science 2025-05-22 Weihao Xia , Cengiz Oztireli
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