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Graphs are quickly emerging as a leading abstraction for the representation of data. One important application domain originates from an emerging discipline called "connectomics". Connectomics studies the brain as a graph; vertices…

Neural networks for structured data like graphs have been studied extensively in recent years. To date, the bulk of research activity has focused mainly on static graphs. However, most real-world networks are dynamic since their topology…

Machine Learning · Computer Science 2020-03-03 Changmin Wu , Giannis Nikolentzos , Michalis Vazirgiannis

A pseudodiagram is a diagram of a knot with some crossing information missing. We review and expand the theory of pseudodiagrams introduced by R. Hanaki. We then extend this theory to the realm of virtual knots, a generalization of knots.…

Geometric Topology · Mathematics 2011-09-20 Allison Henrich , Noel MacNaughton , Sneha Narayan , Oliver Pechenik , Jennifer Townsend

This is a survey paper on algorithms for solving problems in 3-dimensional topology. In particular, it discusses Haken's approach to the recognition of the unknot, and recent variations.

Geometric Topology · Mathematics 2015-06-26 Joel Hass

Graphs are widely used in various fields of computer science. They have also found application in unrelated areas, leading to a diverse range of problems. These problems can be modeled as relationships between entities in various contexts,…

Data Structures and Algorithms · Computer Science 2024-05-20 Davide Rucci

This work presents KnotDLO, a method for one-handed Deformable Linear Object (DLO) knot tying that is robust to occlusion, repeatable for varying rope initial configurations, interpretable for generating motion policies, and requires no…

Robotics · Computer Science 2025-06-30 Holly Dinkel , Raghavendra Navaratna , Jingyi Xiang , Brian Coltin , Trey Smith , Timothy Bretl

We inductively define layers of colorings of knot and knotted surface diagrams using ternary quasigroups. Homological invariants from such systems of colorings use shorter differentials and of higher degree than the standard homology…

Geometric Topology · Mathematics 2019-03-27 Maciej Niebrzydowski

We review quantum field theory approach to the knot theory. Using holomorphic gauge we obtain the Kontsevich integral. It is explained how to calculate Vassiliev invariants and coefficients in Kontsevich integral in a combinatorial way…

High Energy Physics - Theory · Physics 2014-04-03 Petr Dunin-Barkowski , Alexey Sleptsov , Andrey Smirnov

Graph neural networks (GNNs) have recently grown in popularity in the field of artificial intelligence (AI) due to their unique ability to ingest relatively unstructured data types as input data. Although some elements of the GNN…

Machine Learning · Computer Science 2021-12-28 Isaac Ronald Ward , Jack Joyner , Casey Lickfold , Yulan Guo , Mohammed Bennamoun

Topological gauge theories in four dimensions which admit surface operators provide a natural framework for realizing homological knot invariants. Every such theory leads to an action of the braid group on branes on the corresponding moduli…

High Energy Physics - Theory · Physics 2015-05-13 Sergei Gukov

Graphs are commonly used to encode relationships among entities, yet their abstractness makes them difficult to analyze. Node-link diagrams are popular for drawing graphs, and force-directed layouts provide a flexible method for node…

Graphics · Computer Science 2020-01-14 Ashley Suh , Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

Enabling robots to perform complex dynamic tasks such as picking up an object in one sweeping motion or pushing off a wall to quickly turn a corner is a challenging problem. The dynamic interactions implicit in these tasks are critical…

Robotics · Computer Science 2022-10-03 Saumya Saxena , Oliver Kroemer

Node-link diagrams are a popular method for representing graphs that capture relationships between individuals, businesses, proteins, and telecommunication endpoints. However, node-link diagrams may fail to convey insights regarding graph…

Social and Information Networks · Computer Science 2023-09-20 Paul Rosen , Mustafa Hajij , Bei Wang

Node-link diagrams are widely used to facilitate network explorations. However, when using a graph drawing technique to visualize networks, users often need to tune different algorithm-specific parameters iteratively by comparing the…

Human-Computer Interaction · Computer Science 2019-10-10 Yong Wang , Zhihua Jin , Qianwen Wang , Weiwei Cui , Tengfei Ma , Huamin Qu

Topology diagrams are widely seen in power system applications, but their automatic generation is often easier said than done. When facing power transmission systems with strongly-meshed structures, existing approaches can hardly produce…

Systems and Control · Electrical Eng. & Systems 2023-03-21 Jingyu Wang , Jinfu Chen , Dongyuan Shi , Xianzhong Duan

This paper introduces new invariants of rigid vertex graph embeddings by using non-local combinatorial information that is available at each graphical node. The new non-local information that we use in this paper involves parity in the…

Algebraic Topology · Mathematics 2012-07-31 Louis H. Kauffman , Rama Mishra

The combinatorial approach to knot theory treats knots as diagrams modulo Reidemeister moves. Many constructions of knot invariants (e.g., index polynomials, quandle colorings, etc.) use elements of diagrams such as arcs and crossings by…

Geometric Topology · Mathematics 2025-04-29 Igor Nikonov

Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology,…

Neurons and Cognition · Quantitative Biology 2018-04-03 Jason Kim , Jonathan M. Soffer , Ari E. Kahn , Jean M. Vettel , Fabio Pasqualetti , Danielle S. Bassett

Learning graphs from sets of nodal observations represents a prominent problem formally known as graph topology inference. However, current approaches are limited by typically focusing on inferring single networks, and they assume that…

Social and Information Networks · Computer Science 2021-11-17 Samuel Rey , Andrei Buciulea , Madeline Navarro , Santiago Segarra , Antonio G. Marques

A computational graph in a deep neural network (DNN) denotes a specific data flow diagram (DFD) composed of many tensors and operators. Existing toolkits for visualizing computational graphs are not applicable when the structure is highly…

Human-Computer Interaction · Computer Science 2023-01-02 Rusheng Pan , Zhiyong Wang , Yating Wei , Han Gao , Gongchang Ou , Caleb Chen Cao , Jingli Xu , Tong Xu , Wei Chen
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