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The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms…

Machine Learning · Computer Science 2019-08-09 Sourav Mukherjee , Tim Oates , Ryan Wright

The object-oriented class is, in general, the most utilized element in programming and modeling. It is employed throughout the software development process, from early domain analysis phases to later maintenance phases. A class diagram…

Software Engineering · Computer Science 2017-10-03 Sabah Al-Fedaghi

In the last decade or so, we have witnessed deep learning reinvigorating the machine learning field. It has solved many problems in the domains of computer vision, speech recognition, natural language processing, and various other tasks…

Machine Learning · Computer Science 2021-09-09 Lilapati Waikhom , Ripon Patgiri

In this manuscript we introduce a method to measure entanglement of curves in 3-space that extends the notion of knot and link polynomials to open curves. We define the bracket polynomial of curves in 3-space and show that it has real…

Geometric Topology · Mathematics 2021-04-28 Eleni Panagiotou , Louis H. Kauffman

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne

Patterns stored within pre-trained deep neural networks compose large and powerful descriptive languages that can be used for many different purposes. Typically, deep network representations are implemented within vector embedding spaces,…

Neural and Evolutionary Computing · Computer Science 2017-08-10 Dario Garcia-Gasulla , Armand Vilalta , Ferran Parés , Jonatan Moreno , Eduard Ayguadé , Jesus Labarta , Ulises Cortés , Toyotaro Suzumura

We introduce Hoop Diagrams, a new visualization technique for set data. Hoop Diagrams are a circular visualization with hoops representing sets and sectors representing set intersections. We present an interactive tool for drawing Hoop…

In this work we study the topological properties of temporal hypergraphs. Hypergraphs provide a higher dimensional generalization of a graph that is capable of capturing multi-way connections. As such, they have become an integral part of…

Computational Geometry · Computer Science 2023-02-07 Audun Myers , Cliff Joslyn , Bill Kay , Emilie Purvine , Gregory Roek , Madelyn Shapiro

Graph Neural Networks (GNNs) have achieved significant success across various applications. However, their complex structures and inner workings can be challenging for non-AI experts to understand. To address this issue, this study presents…

Human-Computer Interaction · Computer Science 2025-12-18 Yilin Lu , Chongwei Chen , Yuxin Chen , Kexin Huang , Marinka Zitnik , Qianwen Wang

Chord diagrams, under the name of Gauss diagrams, are used in low-dimensional topology as an important tool for studying curves or knots. Those Gauss diagrams that correspond to curves or knots are called realizable. The theme of our paper…

Geometric Topology · Mathematics 2021-08-09 Abdullah Khan , Alexei Lisitsa , Viktor Lopatkin , Alexei Vernitski

In this work the thermodynamic properties of short polymer knots (up to 120 segments) defined on a simple cubic lattice are studied with the help of the Wang-Landau Monte Carlo algorithm. The sampling process is performed using pivot…

Soft Condensed Matter · Physics 2015-06-16 Yani Zhao , Franco Ferrari

In the communication systems domain, constructing and maintaining network topologies via topology control (TC) algorithms is an important cross-cutting research area. Network topologies are usually modeled using attributed graphs whose…

Software Engineering · Computer Science 2018-05-15 Roland Kluge , Michael Stein , Gergely Varró , Andy Schürr , Matthias Hollick , Max Mühlhäuser

Diagrams often appear as node-link representations in many contexts, such as taxonomies, mind maps and networks in textbooks. Despite their pervasiveness, they present significant accessibility challenges for blind and low-vision people. To…

Human-Computer Interaction · Computer Science 2024-05-08 Yichun Zhao , Miguel A. Nacenta , Mahadeo A. Sukhai , Sowmya Somanath

The function of a real network depends not only on the reliability of its own components, but is affected also by the simultaneous operation of other real networks coupled with it. Robustness of systems composed of interdependent network…

Physics and Society · Physics 2015-07-10 Filippo Radicchi

In this paper we discuss the applications of knotoids to modelling knots in open curves and produce new knotoid invariants. We show how invariants of knotoids generally give rise to well-behaved measures of how much an open curve is…

Geometric Topology · Mathematics 2023-06-14 Wout Moltmaker , Roland van der Veen

Ng constructed an invariant of knots in ${\mathbb{R}}^3$, a combinatorial knot contact homology. Extending his study, we construct an invariant of surface-knots in ${\mathbb{R}}^4$ using marked graph diagrams.

Geometric Topology · Mathematics 2019-09-17 Hiroshi Matsuda

Three new graph invariants are introduced which may be measured from a quantum graph state and form examples of a framework under which other graph invariants can be constructed. Each invariant is based on distinguishing a different number…

Quantum Physics · Physics 2019-11-20 P. W. Mills , R. P. Rundle , J. H. Samson , Simon J. Devitt , Todd Tilma , V. M. Dwyer , Mark J. Everitt

A diagrammatic method is presented for averaging over the circular ensemble of random-matrix theory. The method is applied to phase-coherent conduction through a chaotic cavity (a ``quantum dot'') and through the interface between a normal…

Condensed Matter · Physics 2007-05-23 P. W. Brouwer , C. W. J. Beenakker

This paper considers the problem of detecting topology variations in dynamical networks. We consider a network whose behavior can be represented via a linear dynamical system. The problem of interest is then that of finding conditions under…

Systems and Control · Computer Science 2015-04-17 G. Battistelli , P. Tesi

Marked vertex diagrams provide a combinatorial way to represent knotted surfaces in $\mathbb{R}^4$; including virtual crossings allows for a theory of virtual knotted surfaces and virtual cobordisms. Biquandle counting invariants are…

Geometric Topology · Mathematics 2015-06-08 Sam Nelson , Patricia Rivera
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