Related papers: A Phenomenological Approach to Interactive Knot Di…
This paper is a survey of knot theory and invariants of knots and links from the point of view of categories of diagrams. The topics range from foundations of knot theory to virtual knot theory and topological quantum field theory.
In this article we discuss applications of neural networks to recognising knots and, in particular, to the unknotting problem. One of motivations for this study is to understand how neural networks work on the example of a problem for which…
Classical knot theory deals with {\em diagrams} and {\em invariants}. By means of horizontal {\em trisecants}, we construct a new theory of classical braids with invariants valued in {\em pictures}. These pictures are closely related to…
This paper explores the interactions between knot theory and quantum computing. On one side, knot theory has been used to create models of quantum computing, and on the other, it is a source of computational problems. Knot theory is often…
Data science offers a powerful tool to understand objects in multiple sciences. In this paper we utilize concept of data science, most notably topological data analysis, to extend our understanding of knot theory. This approach provides a…
Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…
Spin networks, essentially labeled graphs, are ``good quantum numbers'' for the quantum theory of geometry. These structures encompass a diverse range of techniques which may be used in the quantum mechanics of finite dimensional systems,…
Knot theory provides a powerful tool for the understanding of topological matters in biology, chemistry, and physics. Here knot theory is introduced to describe topological phases in the quantum spin system. Exactly solvable models with…
We show that a topological quantum computer based on the evaluation of a Witten-Reshetikhin-Turaev TQFT invariant of knots can always be arranged so that the knot diagrams with which one computes are diagrams of hyperbolic knots. The…
The notion of a pseudoknot is defined as an equivalence class of knot diagrams that may be missing some crossing information. We provide here a topological invariant schema for pseudoknots and their relatives, 4-valent rigid vertex spatial…
In this paper, we introduce a novel way to use geometric deep learning for knot data by constructing a functor that takes knots to graphs and using graph neural networks. We will attempt to predict several knot invariants with this…
Virtual knot theory is a generalization (discovered by the author in 1996) of knot theory to the study of all oriented Gauss codes. (Classical knot theory is a study of planar Gauss codes.) Graph theory studies non-planar graphs via…
A knot is a circle piecewise-linearly embedded into the 3-sphere. The topology of a knot is intimately related to that of its exterior, which is the complement of an open regular neighborhood of the knot. Knots are typically encoded by…
The topological framework of circuit topology has recently been introduced to complement knot theory and to help in understanding the physics of molecular folding. Naturally evolved linear molecular chains, such as proteins and nucleic…
We introduce and study knotoids. Knotoids are represented by diagrams in a surface which differ from the usual knot diagrams in that the underlying curve is a segment rather than a circle. Knotoid diagrams are considered up to Reidemeister…
Our goal is to one day take a photo of a knot and have a phone automatically recognize it. In this expository work, we explain a strategy to approximate this goal, using a mixture of modern machine learning methods (in particular…
In this paper, we introduce a new approach for drawing diagrams that have applications in software visualization. Our approach is to use a technique we call confluent drawing for visualizing non-planar diagrams in a planar way. This…
In this paper we introduce a representation of knots and links called a cube diagram. We show that a property of a cube diagram is a link invariant if and only if the property is invariant under two types of cube diagram operations. A knot…
Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…
In this note, I describe a formalism for treating knots as geometric spaces, and make an application to a simple statistical mechanics computation. The motivation for this study is the natural visual symmetry of the knot, and I describe how…