Related papers: Universal rooted phylogenetic tree shapes and univ…

In the study of extensions of polytopes of combinatorial optimization problems, a notorious open question is that for the size of the smallest extended formulation of the Minimum Spanning Tree problem on a complete graph with $n$ nodes. The…

We define a new balance index for rooted phylogenetic trees based on the symmetry of the evolutive history of every set of 4 leaves. This index makes sense for multifurcating trees and it can be computed in time linear in the number of…

Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…

In this paper and a companion paper, we prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as…

A tree T_uni is m-universal for the class of trees if for every tree T of size m, T can be obtained from T_uni by successive contractions of edges. We prove that a m-universal tree for the class of trees has at least mln(m) + (gamma-1)m +…

A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

In this note, we obtain an upper bound on the maximum number of distinct non-empty palindromes in starlike trees. This bound implies, in particular, that there are at most $4n$ distinct non-empty palindromes in a starlike tree with three…

We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…

The {\sc Directed Maximum Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) in a given digraph with the maximum number of leaves. In this paper, we improve known parameterized algorithms and…

We consider a continuous time random walk on the rooted binary tree of depth $n$ with all transition rates equal to one and study its cover time, namely the time until all vertices of the tree have been visited. We prove that, normalized by…

Let $P$ be a set of $n$ points in the plane in general position. We show that at least $\lfloor n/3\rfloor$ plane spanning trees can be packed into the complete geometric graph on $P$. This improves the previous best known lower bound…

In this paper we study binary trees with choosable edge lengths, in particular rooted binary trees with the property that the two edges leading from every non-leaf to its two children are assigned integral lengths $l_1$ and $l_2$ with…

We study spanners in planar domains, including polygonal domains, polyhedral terrain, and planar metrics. Previous work showed that for any constant $\epsilon\in (0,1)$, one could construct a $(2+\epsilon)$-spanner with $O(n\log(n))$ edges…

Phylogenetic networks are a generalisation of phylogenetic trees that allow for more complex evolutionary histories that include hybridisation-like processes. It is of considerable interest whether a network can be considered `tree-like' or…

In this paper we study a family of algorithms, introduced by Chan [SODA 1999] and called LR-algorithms, for drawing ordered rooted binary trees. In particular, we are interested in constructing LR-drawings (that are drawings obtained via…

We prove limit theorems for sums of functions of subtrees of binary search trees and random recursive trees. In particular, we give simple new proofs of the fact that the number of fringe trees of size $ k=k_n $ in the binary search tree…

Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…

An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…

Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…

We show that there exists a graph $G$ with $O(n)$ nodes, where any forest of $n$ nodes is a node-induced subgraph of $G$. Furthermore, for constant arboricity $k$, the result implies the existence of a graph with $O(n^k)$ nodes that…