Related papers: Universal rooted phylogenetic tree shapes and univ…
A string-like compact data structure for unlabelled rooted trees is given using 2n bits.
We obtain new lower and upper bounds for the maximum multiplicity of some weighted and, respectively, non-weighted common geometric graphs drawn on n points in the plane in general position (with no three points collinear): perfect…
We here both unify and generalize nonassociative structures on typed binary trees, that is to say plane binary trees which edges are decorated by elements of a set $\Omega$. We prove that we obtain such a structure, called an…
In this paper, we redesign and simplify an algorithm due to Remy et al. for the generation of rooted planar trees that satisfies a given partition of degrees. This new version is now optimal in terms of random bit complexity, up to a…
We introduce a notion of finite sampling consistency for phylogenetic trees and show that the set of finitely sampling consistent and exchangeable distributions on n leaf phylogenetic trees is a polytope. We use this polytope to show that…
We prove that every simple polygon contains a degree 3 tree encompassing a prescribed set of vertices. We give tight bounds on the minimal number of degree 3 vertices. We apply this result to reprove a result from Bose et al. that every set…
A set $U\subseteq \reals^2$ is $n$-universal if all $n$-vertex planar graphs have a planar straight-line embedding into $U$. We prove that if $Q \subseteq \reals^2$ consists of points chosen randomly and uniformly from the unit square then…
It follows from a classical result of Jordan that every tree with maximum degree at most $r$ containing a vertex set labeled by $[n]$, has a single-edge cut which separates two subsets $A,B \subset [n]$ for which $\min\{|A|,|B|\} \ge…
We consider the top tree compression scheme introduced by Bille et al. [ICALP 2013] and construct an infinite family of trees on $n$ nodes labeled from an alphabet of size $\sigma$, for which the size of the top DAG is…
The Yule process generates a class of binary trees which is fundamental to population genetic models and other applications in evolutionary biology. In this paper, we introduce a family of sub-classes of ranked trees, called Omega-trees,…
We find presentations for subalgebras of invariants of the coordinate algebras of binary symmetric models of phylogenetic trees studied by Buczynska and Wisniewski in \cite{BW}. These algebras arise as toric degenerations of rings of global…
This paper introduces a new combinatorial framework for modeling the growth of binary trees through a discrete evolution process that incorporates a growing rule and an extinction rule. Building upon the theory of increasingly labeled…
It has remained an open question for some time whether, given a set of not necessarily binary (i.e. "nonbinary") trees T on a set of taxa X, it is possible to determine in time f(r).poly(m) whether there exists a phylogenetic network that…
We study the bounded regions in a generic slice of the hyperplane arrangement in $\mathbb{R}^n$ consisting of the hyperplanes defined by $x_i$ and $x_i+x_j$. The bounded regions are in bijection with several classes of combinatorial…
The classic Maxwell formula calculates the length of a planar locally minimal binary tree in terms of coordinates of its boundary vertices and directions of incoming edges. However, if an extreme tree with a given topology and a boundary…
We present a new uniform random sampler for binary trees with $n$ internal nodes consuming $2n + \Theta(\log(n)^2)$ random bits on average. This makes it quasi-optimal and out-performs the classical Remy algorithm. We also present a sampler…
Let T be a (not necessarily positive) weighted tree with n leaves numbered by the set {1,...,n}. Define the k-weights of the tree D_{i_1,....,i_k}(T) as the sum of the lengths of the edges of the minimal subtree connecting i_1,....,i_k. We…
We consider spanning trees of $n$ points in convex position whose edges are pairwise non-crossing. Applying a flip to such a tree consists in adding an edge and removing another so that the result is still a non-crossing spanning tree.…
We prove that, for an undirected graph with $n$ vertices and $m$ edges, each labeled with a linear function of a parameter $\lambda$, the number of different minimum spanning trees obtained as the parameter varies can be $\Omega(m\log n)$.
A classical result of Koml\'os, S\'ark\"ozy and Szemer\'edi states that every $n$-vertex graph with minimum degree at least $(1/2+ o(1))n$ contains every $n$-vertex tree with maximum degree $O(n/\log{n})$ as a subgraph, and the bounds on…