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Deep neural networks (DNNs) have been shown to memorize their training data, yet similar analyses for graph neural networks (GNNs) remain largely under-explored. We introduce NCMemo (Node Classification Memorization), the first framework to…

Machine Learning · Computer Science 2025-09-04 Adarsh Jamadandi , Jing Xu , Adam Dziedzic , Franziska Boenisch

While Graph Neural Networks (GNNs) have achieved enormous success in multiple graph analytical tasks, modern variants mostly rely on the strong inductive bias of homophily. However, real-world networks typically exhibit both homophilic and…

Machine Learning · Computer Science 2024-09-18 Jingwei Guo , Kaizhu Huang , Rui Zhang , Xinping Yi

Graph Convolutional Networks (GCNs) gained traction for graph representation learning, with recent attention on improving performance on heterophilic graphs for various real-world applications. The localized feature aggregation in a typical…

Machine Learning · Computer Science 2025-07-30 Garv Kaushik

How can we find meaningful clusters in a graph robustly against noise edges? Graph clustering (i.e., dividing nodes into groups of similar ones) is a fundamental problem in graph analysis with applications in various fields. Recent studies…

Machine Learning · Computer Science 2023-11-09 Hyeonsoo Jo , Fanchen Bu , Kijung Shin

Since heterogeneity presents a fundamental challenge in graph federated learning, many existing methods are proposed to deal with node feature heterogeneity and structure heterogeneity. However, they overlook the critical homophily…

Machine Learning · Computer Science 2025-02-20 Wentao Yu

Multimodal graphs, which integrate unstructured heterogeneous data with structured interconnections, offer substantial real-world utility but remain insufficiently explored in unsupervised learning. In this work, we initiate the study of…

Artificial Intelligence · Computer Science 2025-07-22 Zhaochen Guo , Zhixiang Shen , Xuanting Xie , Liangjian Wen , Zhao Kang

Spectral Graph Neural Networks (SGNNs) have achieved remarkable performance in tasks such as node classification due to their ability to learn flexible filters. Typically, these filters are learned under the supervision of downstream tasks,…

Machine Learning · Computer Science 2025-08-06 Kangkang Lu , Yanhua Yu , Zhiyong Huang , Tat-Seng Chua

Graph neural networks (GNNs) are widely applied in graph data modeling. However, existing GNNs are often trained in a task-driven manner that fails to fully capture the intrinsic nature of the graph structure, resulting in sub-optimal node…

Machine Learning · Computer Science 2024-07-17 Zhenhua Huang , Kunhao Li , Shaojie Wang , Zhaohong Jia , Wentao Zhu , Sharad Mehrotra

Hypergraphs, as a generalization of traditional graphs, naturally capture high-order relationships. In recent years, hypergraph neural networks (HNNs) have been widely used to capture complex high-order relationships. However, most existing…

Machine Learning · Computer Science 2025-11-25 Renchu Guan , Xuyang Li , Yachao Zhang , Wei Pang , Fausto Giunchiglia , Ximing Li , Yonghao Liu , Xiaoyue Feng

To improve the performance of Graph Neural Networks (GNNs), Graph Structure Learning (GSL) has been extensively applied to reconstruct or refine original graph structures, effectively addressing issues like heterophily, over-squashing, and…

Machine Learning · Computer Science 2024-11-13 Yilun Zheng , Zhuofan Zhang , Ziming Wang , Xiang Li , Sitao Luan , Xiaojiang Peng , Lihui Chen

We investigate graph neural networks on graphs with heterophily. Some existing methods amplify a node's neighborhood with multi-hop neighbors to include more nodes with homophily. However, it is a significant challenge to set personalized…

Machine Learning · Computer Science 2022-05-17 Xiang Li , Renyu Zhu , Yao Cheng , Caihua Shan , Siqiang Luo , Dongsheng Li , Weining Qian

Unsupervised node representation learning aims to obtain meaningful node embeddings without relying on node labels. To achieve this, graph convolution, which aggregates information from neighboring nodes, is commonly employed to encode node…

Machine Learning · Computer Science 2025-12-18 Sunwoo Kim , Soo Yong Lee , Kyungho Kim , Hyunjin Hwang , Jaemin Yoo , Kijung Shin

Graphs have become increasingly popular in modeling structures and interactions in a wide variety of problems during the last decade. Graph-based clustering and semi-supervised classification techniques have shown impressive performance.…

Machine Learning · Computer Science 2020-09-01 Zhao Kang , Chong Peng , Qiang Cheng , Xinwang Liu , Xi Peng , Zenglin Xu , Ling Tian

Graph Neural Networks (GNNs) struggle to balance heterophily and homophily in representation learning, a challenge further amplified in self-supervised settings. We propose H$^3$GNNs, an end-to-end self-supervised learning framework that…

Machine Learning · Computer Science 2025-04-17 Rui Xue , Tianfu Wu

Graph neural networks (GNNs) have been extensively studied for prediction tasks on graphs. As pointed out by recent studies, most GNNs assume local homophily, i.e., strong similarities in local neighborhoods. This assumption however limits…

Machine Learning · Computer Science 2021-10-04 Sean Li , Dongwoo Kim , Qing Wang

Employing graph neural networks (GNNs) for graph clustering has shown promising results in deep graph clustering. However, existing methods disregard the reciprocal relationship between representation learning and structure augmentation:…

Machine Learning · Computer Science 2026-05-19 Shifei Ding , Benyu Wu , Xiao Xu , Ling Ding , Xindong Wu

Graph Contrastive Learning (GCL) has shown strong promise for unsupervised graph representation learning, yet its effectiveness on heterophilic graphs, where connected nodes often belong to different classes, remains limited. Most existing…

Machine Learning · Computer Science 2026-05-12 Yanan Zhao , Feng Ji , Jingyang Dai , Jiaze Ma , Wee Peng Tay

Graph neural networks (GNNs) learn to represent nodes by aggregating information from their neighbors. As GNNs increase in depth, their receptive field grows exponentially, leading to high memory costs. Several existing methods address this…

Machine Learning · Computer Science 2025-07-16 Taraneh Younesian , Daniel Daza , Emile van Krieken , Thiviyan Thanapalasingam , Peter Bloem

Graph neural networks (GNNs) have achieved great success in various graph problems. However, most GNNs are Message Passing Neural Networks (MPNNs) based on the homophily assumption, where nodes with the same label are connected in graphs.…

Machine Learning · Computer Science 2022-10-18 Junjie Xu , Enyan Dai , Xiang Zhang , Suhang Wang

Graphs are widely used to describe real-world objects and their interactions. Graph Neural Networks (GNNs) as a de facto model for analyzing graphstructured data, are highly sensitive to the quality of the given graph structures. Therefore,…

Machine Learning · Computer Science 2022-02-16 Yanqiao Zhu , Weizhi Xu , Jinghao Zhang , Yuanqi Du , Jieyu Zhang , Qiang Liu , Carl Yang , Shu Wu
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