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MATLAB/Simulink is widely used for model-based design. Engineers create Simulink models and compile them to embedded code, often to control safety-critical cyber-physical systems in automotive, aerospace, and healthcare applications.…

Software Engineering · Computer Science 2022-04-01 Sohil Lal Shrestha , Shafiul Azam Chowdhury , Christoph Csallner

Results of simulation studies evaluating the performance of statistical methods are often considered actionable and thus can have a major impact on the way empirical research is implemented. However, so far there is limited evidence about…

Context: Software Engineering research makes use of collections of software artifacts (corpora) to derive empirical evidence from. Goal: To improve quality and reproducibility of research, we need to understand the characteristics of used…

Software Engineering · Computer Science 2013-04-04 Ekaterina Pek , Ralf Lämmel

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

Digital Libraries · Computer Science 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Deep learning (DL) techniques have gained significant popularity among software engineering (SE) researchers in recent years. This is because they can often solve many SE challenges without enormous manual feature engineering effort and…

Software Engineering · Computer Science 2024-12-10 Chao Liu , Cuiyun Gao , Xin Xia , David Lo , John Grundy , Xiaohu Yang

In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not…

Software Engineering · Computer Science 2023-08-03 Lázaro Costa , Susana Barbosa , Jácome Cunha

Software developers often submit questions to technical Q&A sites like Stack Overflow (SO) to resolve code-level problems. In practice, they include example code snippets with questions to explain the programming issues. Existing research…

Software Engineering · Computer Science 2024-07-16 Saikat Mondal , Banani Roy

Lack of repeatability and generalisability are two significant threats to continuing scientific development in Natural Language Processing. Language models and learning methods are so complex that scientific conference papers no longer…

Computation and Language · Computer Science 2018-08-07 Andrew Moore , Paul Rayson

Model-Based Development (MBD) is widely used for embedded controls development, with Matlab Simulink being one of the most used modelling environments in industry. As with all software, Simulink models are subject to evolution over their…

Software Engineering · Computer Science 2020-07-21 Monika Jaskolka , Vera Pantelic , Alan Wassyng , Mark Lawford

We here present SIMLR (Single-cell Interpretation via Multi-kernel LeaRning), an open-source tool that implements a novel framework to learn a sample-to-sample similarity measure from expression data observed for heterogenous samples. SIMLR…

Genomics · Quantitative Biology 2018-01-22 Bo Wang , Daniele Ramazzotti , Luca De Sano , Junjie Zhu , Emma Pierson , Serafim Batzoglou

This study reviewed the use of Large Language Models (LLMs) in healthcare, focusing on their training corpora, customization techniques, and evaluation metrics. A systematic search of studies from 2021 to 2024 identified 61 articles. Four…

Computation and Language · Computer Science 2025-02-18 Shuqi Yang , Mingrui Jing , Shuai Wang , Jiaxin Kou , Manfei Shi , Weijie Xing , Yan Hu , Zheng Zhu

Large Language Models have gained remarkable interest in industry and academia. The increasing interest in LLMs in academia is also reflected in the number of publications on this topic over the last years. For instance, alone 78 of the…

Software testing is crucial for ensuring the correctness and reliability of software systems. Automated generation of issue reproduction tests from natural language issue descriptions enhances developer productivity by simplifying root…

Software Engineering · Computer Science 2026-01-21 Aditya Bharat Soni , Rajat Ghosh , Vaishnavi Bhargava , Valerie Chen , Debojyoti Dutta

In light of recent legal allegations brought by publishers, newspapers, and other creators of copyrighted corpora against large language model developers who use their copyrighted materials for training or fine-tuning purposes, we propose a…

Computation and Language · Computer Science 2024-08-05 Devam Mondal , Carlo Lipizzi

Objective: In this study, we aim to replicate an artefact-based study on software testing to address the gap. We focus on (a) providing a step by step guide of the replication, reflecting on challenges when replicating artefact-based…

Software Engineering · Computer Science 2022-04-14 Nasir Mehmood Minhas , Mohsin Irshad , Kai Petersen , Jürgen Börstler

Reproducing research results in the networking community is important for both academia and industry. The current best practice typically resorts to three approaches: (1) looking for publicly available prototypes; (2) contacting the authors…

Machine Learning · Computer Science 2023-09-12 Qiao Xiang , Yuling Lin , Mingjun Fang , Bang Huang , Siyong Huang , Ridi Wen , Franck Le , Linghe Kong , Jiwu Shu

Finding bugs in a commercial cyber-physical system (CPS) development tool such as Simulink is hard as its codebase contains millions of lines of code and complete formal language specifications are not available. While deep learning…

Software Engineering · Computer Science 2022-03-11 Sohil Lal Shrestha , Christoph Csallner

Matlab/Simulink is a development and simulation language that is widely used by the Cyber-Physical System (CPS) industry to model dynamical systems. There are two mainstream approaches to verify CPS Simulink models: model testing that…

Software Engineering · Computer Science 2019-05-10 Shiva Nejati , Khouloud Gaaloul , Claudio Menghi , Lionel C. Briand , Stephen Foster , David Wolfe

The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around…

Software Engineering · Computer Science 2017-07-31 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Evaluating the computational reproducibility of data analysis pipelines has become a critical issue. It is, however, a cumbersome process for analyses that involve data from large populations of subjects, due to their computational and…

Methodology · Statistics 2018-09-28 Soudabeh Barghi , Lalet Scaria , Ali Salari , Tristan Glatard
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