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The field of deep learning has witnessed significant breakthroughs, spanning various applications, and fundamentally transforming current software capabilities. However, alongside these advancements, there have been increasing concerns…

Machine Learning · Computer Science 2025-05-07 Nikita Ravi , Abhinav Goel , James C. Davis , George K. Thiruvathukal

Large Language Models (LLMs) are distinguished by their architecture, which dictates their parameter size and performance capabilities. Social scientists have increasingly adopted LLMs for text classification tasks, which are difficult to…

Computation and Language · Computer Science 2024-11-05 Marcello Carammia , Stefano Maria Iacus , Giuseppe Porro

Ascertaining the feasibility of independent falsification or repetition of published results is vital to the scientific process, and replication or reproduction experiments are routinely performed in many disciplines. Unfortunately, such…

Databases · Computer Science 2020-09-11 Dimitri Braininger , Wolfgang Mauerer , Stefanie Scherzinger

Reproducibility remains a critical challenge in foundation model training for histopathology, often hindered by software randomness, hardware non-determinism, and inconsistent hyperparameter reporting. To investigate these issues, we…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Usman Afzaal , Ziyu Su , Usama Sajjad , Hao Lu , Mostafa Rezapour , Metin Nafi Gurcan , Muhammad Khalid Khan Niazi

Probabilistic topic models like Latent Dirichlet Allocation (LDA) have been previously extended to the bilingual setting. A fundamental modeling assumption in several of these extensions is that the input corpora are in the form of document…

Computation and Language · Computer Science 2021-12-01 Georgios Balikas , Massih-Reza Amini , Marianne Clausel

Embedded software systems, e.g. automotive, robotic or automation systems are highly configurable and consist of many software components being available in different variants and versions. To identify the degree of reusability between…

Software Engineering · Computer Science 2015-11-18 Bernhard Rumpe , Christoph Schulze , Michael von Wenckstern , Jan Oliver Ringert , Peter Manhart

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

While experimental reproduction remains a pillar of the scientific method, we observe that the software best practices supporting the reproduction of machine learning ( ML ) research are often undervalued or overlooked, leading both to poor…

Software Engineering · Computer Science 2025-09-03 Moritz Wolter , Lokesh Veeramacheneni , Charles Tapley Hoyt

The accelerating pace of research on autoregressive generative models has produced thousands of papers, making manual literature surveys and reproduction studies increasingly impractical. We present a fully open-source, reproducible…

Information Retrieval · Computer Science 2025-08-07 Faruk Alpay , Bugra Kilictas , Hamdi Alakkad

Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…

Human-Computer Interaction · Computer Science 2025-04-15 Lázaro Costa , Susana Barbosa , Jácome Cunha

Empirical software engineering research on production systems has brought forth a better understanding of the software engineering process for practitioners and researchers alike. However, only a small subset of production systems is…

Software Engineering · Computer Science 2024-06-21 Jenny T. Liang , Carmen Badea , Christian Bird , Robert DeLine , Denae Ford , Nicole Forsgren , Thomas Zimmermann

The development of embedded systems requires formal analysis of models such as those described with MATLAB/Simulink. However, the increasing complexity of industrial models makes analysis difficult. This paper proposes a model checking…

Logic in Computer Science · Computer Science 2022-06-08 Daisuke Ishii , Takashi Tomita , Toshiaki Aoki , The Quyen Ngo , Thi Bich Ngoc Do , Hideaki Takai

Simulink is widely used in industrial design processes to model increasingly complex embedded control systems. Thus, their formal analysis is highly desirable. However, this comes with two major challenges: First, Simulink models often…

Systems and Control · Electrical Eng. & Systems 2025-06-18 Pauline Blohm , Felix Schulz , Lisa Willemsen , Anne Remke , Paula Herber

Search-based software testing (SBST) of Simulink models helps find scenarios that demonstrate that the system can reach a state that violates one of its requirements. However, many SBST techniques for Simulink models rely on requirements…

Software Engineering · Computer Science 2025-09-08 Federico Formica , Chris George , Shayda Rahmatyan , Vera Pantelic , Mark Lawford , Angelo Gargantini , Claudio Menghi

Over the past few years, deep learning methods have been applied for a wide range of Software Engineering (SE) tasks, including in particular for the important task of automatically predicting and localizing faults in software. With the…

Software Engineering · Computer Science 2024-02-09 Adil Mukhtar , Dietmar Jannach , Franz Wotawa

Like other types of computational research, modeling and simulation of biological processes (biomodels) is still largely communicated without sufficient detail to allow independent reproduction of results. But reproducibility in this area…

Other Quantitative Biology · Quantitative Biology 2023-04-19 Pedro Mendes

Context: It has been argued that software engineering replications are useful for verifying the results of previous experiments. However, it has not yet been agreed how to check whether the results hold across replications. Besides, some…

Software Engineering · Computer Science 2020-11-06 Adrian Santos , Sira Vegas , Markku Oivo , Natalia Juristo

Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…

Quantitative Methods · Quantitative Biology 2021-04-13 Michael L. Blinov , John H. Gennari , Jonathan R. Karr , Ion I. Moraru , David P. Nickerson , Herbert M. Sauro

CONTEXT: There is growing interest in establishing software engineering as an evidence-based discipline. To that end, replication is often used to gain confidence in empirical findings, as opposed to reproduction where the goal is showing…

Software Engineering · Computer Science 2018-02-14 Martin Shepperd

Motivation: The rapid growth of biological data has intensified the need for transparent, reproducible, and well-documented computational workflows. The ability to clearly connect the steps of a workflow in the code with their description…

Computation and Language · Computer Science 2026-03-10 Clémence Sebe , Olivier Ferret , Aurélie Névéol , Mahdi Esmailoghli , Ulf Leser , Sarah Cohen-Boulakia