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Bi-clustering is a useful approach in analyzing biological data when observations come from heterogeneous groups and have a large number of features. We outline a general Bayesian approach in tackling bi-clustering problems in moderate to…

Applications · Statistics 2021-02-11 Han Yan , Jiexing Wu , Yang Li , Jun S. Liu

Neurons can display highly variable dynamics. While such variability presumably supports the wide range of behaviors generated by the organism, their gene expressions are relatively stable in the adult brain. This suggests that neuronal…

Neurons and Cognition · Quantitative Biology 2023-11-07 Lu Mi , Trung Le , Tianxing He , Eli Shlizerman , Uygar Sümbül

Humans can fluidly adapt their interest in complex environments in ways that machines cannot. Here, we lay the groundwork for a real-world system that passively monitors and merges neural correlates of visual interest across team members…

Neurons and Cognition · Quantitative Biology 2019-01-21 Amelia J. Solon , Stephen M. Gordon , Jonathan R. McDaniel , Vernon J. Lawhern

Understanding how the human brain encodes and processes external visual stimuli has been a fundamental challenge in neuroscience. With advancements in artificial intelligence, sophisticated visual decoding architectures have achieved…

Human-Computer Interaction · Computer Science 2025-07-22 Jiahua Tang , Song Wang , Jiachen Zou , Chen Wei , Quanying Liu

A primary challenge in utilizing in-vitro biological neural networks for computations is finding good encoding and decoding schemes for inputting and decoding data to and from the networks. Furthermore, identifying the optimal parameter…

Neurons and Cognition · Quantitative Biology 2024-04-18 Trym A. E. Lindell , Ola H. Ramstad , Ionna Sandvig , Axel Sandvig , Stefano Nichele

Classification of whole-brain functional connectivity MRI data with convolutional neural networks (CNNs) has shown promise, but the complexity of these models impedes understanding of which aspects of brain activity contribute to…

Neurons and Cognition · Quantitative Biology 2020-05-28 Matthew Leming , John Suckling

Neural decoding, a critical component of Brain-Computer Interface (BCI), has recently attracted increasing research interest. Previous research has focused on leveraging signal processing and deep learning methods to enhance neural decoding…

Neurons and Cognition · Quantitative Biology 2025-12-11 Gaorui Zhang , Zhizhang Yuan , Jialan Yang , Junru Chen , Li Meng , Yang Yang

Deep learning has made significant advances in creating efficient representations of time series data by automatically identifying complex patterns. However, these approaches lack interpretability, as the time series is transformed into a…

Machine Learning · Computer Science 2023-10-26 Etienne Le Naour , Ghislain Agoua , Nicolas Baskiotis , Vincent Guigue

Transformer models have become state-of-the-art in decoding stimuli and behavior from neural activity, significantly advancing neuroscience research. Yet greater transparency in their decision-making processes would substantially enhance…

Quantitative Methods · Quantitative Biology 2025-06-18 Laurence Freeman , Philip Shamash , Vinam Arora , Caswell Barry , Tiago Branco , Eva Dyer

Brain-computer interfaces (BCIs) make possible to interact with the external environment by decoding the mental intention of individuals. BCIs can therefore be used to address basic neuroscience questions but also to unlock a variety of…

Neurons and Cognition · Quantitative Biology 2021-02-12 Juliana Gonzalez-Astudillo , Tiziana Cattai , Giulia Bassignana , Marie-Constance Corsi , Fabrizio De Vico Fallani

Sensory inference under conditions of uncertainty is a major problem in both machine learning and computational neuroscience. An important but poorly understood aspect of sensory processing is the role of active sensing. Here, we present a…

Artificial Intelligence · Computer Science 2014-08-12 Sheeraz Ahmad , Angela Yu

Sensory inference under conditions of uncertainty is a major problem in both machine learning and computational neuroscience. An important but poorly understood aspect of sensory processing is the role of active sensing. Here, we present a…

Artificial Intelligence · Computer Science 2013-05-30 Sheeraz Ahmad , Angela J. Yu

Neural decoding, the process of understanding how brain activity corresponds to different stimuli, has been a primary objective in cognitive sciences. Over the past three decades, advances in functional Magnetic Resonance Imaging (fMRI) and…

Computer Vision and Pattern Recognition · Computer Science 2026-01-28 Yanchen Wang , Adam Turnbull , Tiange Xiang , Yunlong Xu , Sa Zhou , Adnan Masoud , Shekoofeh Azizi , Feng Vankee Lin , Ehsan Adeli

Solving systems of Boolean equations is a fundamental task in symbolic computation and algebraic cryptanalysis, with wide-ranging applications in cryptography, coding theory, and formal verification. Among existing approaches, the Boolean…

Cryptography and Security · Computer Science 2026-04-21 Minzhong Luo , Yudong Sun , Yin Long

Pre-trained models operating directly on raw bytes have achieved promising performance in encrypted network traffic classification (NTC), but often suffer from shortcut learning-relying on spurious correlations that fail to generalize to…

Machine Learning · Computer Science 2026-01-16 Chuyi Wang , Xiaohui Xie , Tongze Wang , Yong Cui

Deep learning frameworks have become increasingly popular in brain computer interface (BCI) study thanks to their outstanding performance. However, in terms of the classification model alone, they are treated as black box as they do not…

Neural and Evolutionary Computing · Computer Science 2021-12-15 Ji-Seon Bang , Seong-Whan Lee

We present a workflow for clinical data analysis that relies on Bayesian Structure Learning (BSL), an unsupervised learning approach, robust to noise and biases, that allows to incorporate prior medical knowledge into the learning process…

Machine Learning · Computer Science 2022-10-12 Elisa Ferrari , Luna Gargani , Greta Barbieri , Lorenzo Ghiadoni , Francesco Faita , Davide Bacciu

Brain-computer interfaces (BCIs) hold great potential for aiding individuals with speech impairments. Utilizing electroencephalography (EEG) to decode speech is particularly promising due to its non-invasive nature. However, recordings are…

Neurons and Cognition · Quantitative Biology 2024-07-11 Motoshige Sato , Kenichi Tomeoka , Ilya Horiguchi , Kai Arulkumaran , Ryota Kanai , Shuntaro Sasai

Modern well-performing approaches to neural decoding are based on machine learning models such as decision tree ensembles and deep neural networks. The wide range of algorithms that can be utilized to learn from neural spike trains, which…

Neurons and Cognition · Quantitative Biology 2023-01-30 Ivan Lazarevich , Ilya Prokin , Boris Gutkin , Victor Kazantsev

Language model based text-to-speech (TTS) models, like VALL-E, have gained attention for their outstanding in-context learning capability in zero-shot scenarios. Neural speech codec is a critical component of these models, which can convert…

Sound · Computer Science 2024-03-12 Yong Ren , Tao Wang , Jiangyan Yi , Le Xu , Jianhua Tao , Chuyuan Zhang , Junzuo Zhou