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Blockchain is a distributed ledger technique that guarantees the traceability of transactions. Blockchain is adopted in multiple domains like finance (e.g., cryptocurrency), healthcare, security, and supply chain. In the open-source…
ORCID is a scientific infrastructure created to solve the problem of author name ambiguity. Over the years ORCID has also become a useful source for studying academic activities reported by researchers. Our objective in this research was to…
GitHub has become a popular social application platform, where a large number of users post their open source projects. In particular, an increasing number of researchers release repositories of source code related to their research papers…
GitHub Sponsors, launched in 2019, enables donations to individual open source software (OSS) developers. Financial support for OSS maintainers and developers is a major issue in terms of sustaining OSS projects, and the ability to donate…
Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…
To satisfy the principles of FAIR software, software sustainability and software citation, research software must be formally published. Publication repositories make this possible and provide published software versions with unique and…
Scientific software is essential to scientific innovation and in many ways it is distinct from other types of software. Abandoned (or unmaintained), buggy, and hard to use software, a perception often associated with scientific software can…
Open Source Software (OSS) plays an important role in the digital economy. Yet although software production is amenable to remote collaboration and its outputs are easily shared across distances, software development seems to cluster…
GitHub repositories consist of various detailed information about the project contributors, the number of commits and its contributors, releases, pull requests, programming languages, and issues. However, no systematic dataset of open…
In this article, we focus on the importance of open research information as the foundation for transparent and responsible research assessment and discovery of research outputs. We introduce work in which we support the open research…
In the world of open-source software (OSS), the number of known vulnerabilities has tremendously increased. The GitHub Advisory Database contains advisories for security risks in GitHub-hosted OSS projects. As of 09/25/2023, there are…
Developers collaboratively discuss, implement, use, and share software entities hosted on software repositories. Proper documentation plays an important role in successful software management and maintenance. Users exploit Issue Tracking…
GitHub's issue reports provide developers with valuable information that is essential to the evolution of a software development project. Contributors can use these reports to perform software engineering tasks like submitting bugs,…
Open Source Software (OSS) often relies on large repositories, like SourceForge, for initial incubation. The OSS repositories offer a large variety of meta-data providing interesting information about projects and their success. In this…
Understanding the geographic reach and community structure of one's scholarly citations is increasingly valuable for career development, grant applications, and collaboration discovery -- yet accessible tools for answering these questions…
Public omics databases like the Gene Expression Omnibus and the Sequence Read Archive offer substantial opportunities for data reuse to address novel biomedical questions. However, it is still difficult to find samples and studies of…
In recent years, funding agencies and journals increasingly advocate for open science practices (e.g. data and method sharing) to improve the transparency, access, and reproducibility of science. However, quantifying these practices at…
Software popularity is a valuable information to modern open source developers, who constantly want to know if their systems are attracting new users, if new releases are gaining acceptance, or if they are meeting user's expectations. In…
Science is conducted collaboratively, often requiring knowledge sharing about computational experiments. When experiments include only datasets, they can be shared using Uniform Resource Identifiers (URIs) or Digital Object Identifiers…
Recent reproducibility case studies have raised concerns showing that much of the deposited research has not been reproducible. One of their conclusions was that the way data repositories store research data and code cannot fully facilitate…