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The notion of software ''fork'' has been shifting over time from the (negative) phenomenon of community disagreements that result in the creation of separate development lines and ultimately software products, to the (positive) practice of…
Objective: The objective was to develop a cloud-based, federated system to serve as a single point of search, discovery and analysis for data generated under the NIH Helping to End Addiction Long-term (HEAL) Initiative. Materials and…
Publishing research data aims to improve the transparency of research results and facilitate the reuse of datasets. In both cases, referencing the datasets that were used is recommended. Research data repositories can support data…
Among the entities involved in software citation, software source code requires special attention, due to the role it plays in ensuring scientific reproducibility. To reference source code we need identifiers that are not only unique and…
Communities on GitHub often use issue labels as a way of triaging issues by assigning them priority ratings based on how urgently they should be addressed. The labels used are determined by the repository contributors and not standardised…
The ability to find data is central to the FAIR principles underlying research data stewardship. As with the ability to reuse data, efforts to ensure and enhance findability have historically focused on discoverability of data by other…
Developers use and contribute to repositories on GitHub. Documentation present in the repositories serves as an important source by helping developers to understand, maintain and contribute to the project. Currently, documentation in a…
Bug reports provide critical insights into software quality, yet existing datasets often suffer from limited scope, outdated content, or insufficient metadata for machine learning. To address these limitations, we present GitBugs-a…
In this paper we present the results of a study into the persistence and availability of web resources referenced from papers in scholarly repositories. Two repositories with different characteristics, arXiv and the UNT digital library, are…
Archival efforts such as (C)LOCKSS and Portico are in place to ensure the longevity of traditional scholarly resources like journal articles. At the same time, researchers are depositing a broad variety of other scholarly artifacts into…
Research software is an integral part of most research today and it is widely accepted that research software artifacts should be accessible and reproducible. However, the sustainable archival of research software artifacts is an ongoing…
Research data are often released upon journal publication to enable result verification and reproducibility. For that reason, research dissemination infrastructures typically support diverse datasets coming from numerous disciplines, from…
Across many domains, large swaths of digital assets are being stored across distributed data repositories, e.g., the DANDI Archive [8]. The distribution and diversity of these repositories impede researchers from formally defining…
In this paper, we address the problem of classifying documents available from the global network of (open access) repositories according to their type. We show that the metadata provided by repositories enabling us to distinguish research…
Research in life sciences is increasingly being conducted in a digital and online environment. In particular, life scientists have been pioneers in embracing new computational tools to conduct their investigations. To support the sharing of…
Financial sustainability is vital for open-source software, yet systematic research on funding remains limited. GitHub Sponsors, launched in 2019 as a direct developer-to-developer funding model, lacks bulk API access, hindering large-scale…
To make digital resources on the web verifiable, immutable, and permanent, we propose a technique to include cryptographic hash values in URIs. We call them trusty URIs and we show how they can be used for approaches like nanopublications…
Sharing artifacts -- such as trained models, pre-built indexes, and the code to use them -- aids in reproducibility efforts by allowing researchers to validate intermediate steps and improves the sustainability of research by allowing…
Today's big data science communities manage their data publication and replication at the application layer. These communities utilize myriad mechanisms to publish, discover, and retrieve datasets - the result is an ecosystem of either…
Recent initiatives advocating responsible, transparent research assessment have intensified the call to use open research information rather than proprietary databases. This study evaluates the coverage and citation representation of…