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One in five arXiv articles published in 2021 contained a URI to a Git Hosting Platform (GHP), which demonstrates the growing prevalence of GHP URIs in scholarly publications. However, GHP URIs are vulnerable to the same reference rot that…
The definition of scholarly content has expanded to include the data and source code that contribute to a publication. While major archiving efforts to preserve conventional scholarly content, typically in PDFs (e.g., LOCKSS, CLOCKSS,…
Open source software development, particularly within institutions such as universities and research laboratories, is often decentralized and difficult to track. Although academic teams produce many impactful scientific tools, their…
Traceability between published scientific breakthroughs and their implementation is essential, especially in the case of open-source scientific software which implements bleeding-edge science in its code. However, aligning the link between…
Git is used as the distributed version control system for many open-source software projects. One Git-based service, GitHub, is the most common code hosting and repository service for open-source software projects. For researchers that…
GitHub, renowned for facilitating collaborative code version control and software production in software teams, expanded its services in 2017 by introducing GitHub Marketplace. This online platform hosts automation tools to assist…
This document explores the advantages of integrating open source software and practices in managing a scientific lab, emphasizing reproducibility and the avoidance of pitfalls. It details practical applications from website management using…
Research software is crucial in the research process and the growth of Open Science underscores the importance of accessing research artifacts, like data and code, raising traceability challenges among outputs. While it is a clear principle…
Marketplaces for distributing software products and services have been getting increasing popularity. GitHub, which is most known for its version control functionality through Git, launched its own marketplace in 2017. GitHub Marketplace…
Software is often developed using versioned controlled software, such as Git, and hosted on centralized Web hosts, such as GitHub and GitLab. These Web hosted software repositories are made available to users in the form of traditional HTML…
GitHub is the world's largest host of source code, with more than 150M repositories. However, most of these repositories are not labeled or inadequately so, making it harder for users to find relevant projects. There have been various…
With the rapid development of AI technologies, thousands of AI papers are being published each year. Many of these papers have released sample code to facilitate follow-up researchers. This paper presents an explorative study of over 1700…
GitHub is the largest host of open source software on the Internet. This large, freely accessible database has attracted the attention of practitioners and researchers alike. But as GitHub's growth continues, it is becoming increasingly…
Many AI researchers are publishing code, data and other resources that accompany their papers in GitHub repositories. In this paper, we refer to these repositories as academic AI repositories. Our preliminary study shows that highly cited…
Release notes (RNs) summarize main changes between two consecutive software versions and serve as a central source of information when users upgrade software. While producing high quality RNs can be hard and poses a variety of challenges to…
Digital information needs to be accessed and used in a manageable and sustainable manner to facilitate the advancement of science and science management. Many types of Persistent Identifiers (PIDs) are already in use and well-established in…
GitHub is the world's largest platform for collaborative software development, with over 100 million users. GitHub is also used extensively for open data collaboration, hosting more than 800 million open data files, totaling 142 terabytes…
GitHub, a central hub for collaborative software development, has revolutionized the open-source software (OSS) ecosystem through its GitHub Marketplace, a platform launched in 2017 to host automation tools aimed at enhancing the efficiency…
The Software Engineering (SE) community has been embracing the open science policy and encouraging researchers to disclose artifacts in their publications. However, the status and trends of artifact practice and quality remain unclear,…
Laboratory research is a complex, collaborative process that involves several stages, including hypothesis formulation, experimental design, data generation and analysis, and manuscript writing. Although reproducibility and data sharing are…