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Finding the common structural features of two molecules is a fundamental task in cheminformatics. Most drugs are small molecules, which can naturally be interpreted as graphs. Hence, the task is formalized as maximum common subgraph…

Data Structures and Algorithms · Computer Science 2016-10-28 Andre Droschinsky , Nils Kriege , Petra Mutzel

Image outpainting seeks for a semantically consistent extension of the input image beyond its available content. Compared to inpainting -- filling in missing pixels in a way coherent with the neighboring pixels -- outpainting can be…

Computer Vision and Pattern Recognition · Computer Science 2021-04-02 Yen-Chi Cheng , Chieh Hubert Lin , Hsin-Ying Lee , Jian Ren , Sergey Tulyakov , Ming-Hsuan Yang

The maximum graph bisection problem is a well known graph partition problem. The problem has been proven to be NP-hard. In the maximum graph bisection problem it is required that the set of vertices is divided into two partition with equal…

Discrete Mathematics · Computer Science 2015-12-03 Zoran Maksimovic

We give a parallel $O(\log(n))$-time algorithm on a CRCW PRAM to assign vertical and horizontal segments to the vertices of any planar bipartite graph $G$ in the following manner: i) Two segments cannot share an interior point ii) Two…

Computational Geometry · Computer Science 2024-09-25 Naman Jain

A planar map is outerplanar if all its vertices belong to the same face. We show that random uniform outerplanar maps with $n$ vertices suitably rescaled by a factor $1/ \sqrt{n}$ converge in the Gromov-Hausdorff sense to…

Probability · Mathematics 2014-05-09 Alessandra Caraceni

We consider upward-planar layered drawings of directed graphs, i.e., crossing-free drawings in which each edge is drawn as a y-monotone curve going upward from its tail to its head, and the y-coordinates of the vertices are integers. The…

Computational Geometry · Computer Science 2026-05-04 Patrizio Angelini , Sabine Cornelsen , Giordano Da Lozzo , Fabrizio Frati , Philipp Kindermann , Ignaz Rutter , Johannes Zink

Let $G=(V, E)$ be a graph where $V$ and $E$ are the vertex and edge sets, respectively. For two disjoint subsets $A$ and $B$ of $V$, we say $A$ \textit{dominates} $B$ if every vertex of $B$ is adjacent to at least one vertex of $A$ in $G$.…

Combinatorics · Mathematics 2024-10-28 Subhabrata Paul , Kamal Santra

Consider the following problem: given a graph with edge costs and a subset Q of vertices, find a minimum-cost subgraph in which there are two edge-disjoint paths connecting every pair of vertices in Q. The problem is a failure-resilient…

Data Structures and Algorithms · Computer Science 2015-10-01 Glencora Borradaile , Philip Klein

Bipartite graphs model the relationship between two disjoint sets of objects. They have a wide range of applications and are often visualized as a 2-layered drawing, where each set of objects is visualized as a set of vertices (points) on…

Computational Geometry · Computer Science 2022-08-30 Reyan Ahmed , Stephen Kobourov , Myroslav Kryven

Let $G$ be a connected planar (but not yet embedded) graph and $F$ a set of additional edges not yet in $G$. The {multiple edge insertion} problem (MEI) asks for a drawing of $G+F$ with the minimum number of pairwise edge crossings, such…

Data Structures and Algorithms · Computer Science 2015-09-29 Markus Chimani , Petr Hliněný

As a partial answer to a question of Rao, a deterministic and customizable efficient algorithm is presented to test whether an arbitrary graphical degree sequence has a bipartite realization. The algorithm can be configured to run in…

Combinatorics · Mathematics 2019-08-20 Kai Wang

In this paper we consider graphs whose edges are associated with a degree of {\em importance}, which may depend on the type of connections they represent or on how recently they appeared in the scene, in a streaming setting. The goal is to…

Data Structures and Algorithms · Computer Science 2017-07-24 Patrizio Angelini , Michael A. Bekos

We study the balanced $k$-way hypergraph partitioning problem, with a special focus on its practical applications to manycore scheduling. Given a hypergraph on $n$ nodes, our goal is to partition the node set into $k$ parts of size at most…

Computational Complexity · Computer Science 2023-04-06 Pál András Papp , Georg Anegg , A. N. Yzelman

Consider a graph drawn on a surface (for example, the plane minus a finite set of obstacle points), possibly with crossings. We provide an algorithm to decide whether such a drawing can be untangled, namely, if one can slide the vertices…

Computational Geometry · Computer Science 2025-07-18 Éric Colin de Verdière , Vincent Despré , Loïc Dubois

We show how to preprocess a weighted undirected $n$-vertex planar graph in $\tilde O(n^{4/3})$ time, such that the distance between any pair of vertices can then be reported in $\tilde O(1)$ time. This improves the previous $\tilde…

Data Structures and Algorithms · Computer Science 2025-03-25 Itai Boneh , Shay Golan , Shay Mozes , Daniel Prigan , Oren Weimann

We present subquadratic algorithms in the algebraic decision-tree model for several \textsc{3Sum}-hard geometric problems, all of which can be reduced to the following question: Given two sets $A$, $B$, each consisting of $n$ pairwise…

Computational Geometry · Computer Science 2021-09-17 Boris Aronov , Mark de Berg , Jean Cardinal , Esther Ezra , John Iacono , Micha Sharir

The hypergraph duality problem DUAL is defined as follows: given two simple hypergraphs $\mathcal{G}$ and $\mathcal{H}$, decide whether $\mathcal{H}$ consists precisely of all minimal transversals of $\mathcal{G}$ (in which case we say that…

Computational Complexity · Computer Science 2019-03-22 Georg Gottlob , Enrico Malizia

We study the point location problem in incremental (possibly disconnected) planar subdivisions, that is, dynamic subdivisions allowing insertions of edges and vertices only. Specifically, we present an $O(n\log n)$-space data structure for…

Computational Geometry · Computer Science 2018-09-28 Eunjin Oh

We initiate the study of Simultaneous Graph Embedding with Fixed Edges in the beyond planarity framework. In the QuaSEFE problem, we allow edge crossings, as long as each graph individually is drawn quasiplanar, that is, no three edges…

Data Structures and Algorithms · Computer Science 2019-08-26 Patrizio Angelini , Henry Förster , Michael Hoffmann , Michael Kaufmann , Stephen Kobourov , Giuseppe Liotta , Maurizio Patrignani

Graph Neural Networks (GNNs) with equivariant properties have achieved significant success in modeling complex dynamic systems and molecular properties. However, their expressiveness ability is limited by: (1) Existing methods often…

Machine Learning · Computer Science 2025-11-04 Yingxu Wang , Nan Yin , Mingyan Xiao , Xinhao Yi , Siwei Liu , Shangsong Liang
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