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In this work we present the homogenization of a reaction-diffusion model that includes an evolving microstructure. Such type of problems model, for example, mineral dissolution and precipitation in a porous medium. Hence, we are dealing…

Analysis of PDEs · Mathematics 2022-05-09 Markus Gahn , Iuliu Sorin Pop

Graph structures offer a versatile framework for representing diverse patterns in nature and complex systems, applicable across domains like molecular chemistry, social networks, and transportation systems. While diffusion models have…

Machine Learning · Computer Science 2024-06-10 Adrien Carrel

We present a multiscale approach to model diffusion in a crowded environment and its effect on the reaction rates. Diffusion in biological systems is often modeled by a discrete space jump process in order to capture the inherent noise of…

Subcellular Processes · Quantitative Biology 2016-03-18 Lina Meinecke

We develop numerical methods for reaction-diffusion systems based on the equations of fluctuating hydrodynamics (FHD). While the FHD formulation is formally described by stochastic partial differential equations (SPDEs), it becomes similar…

Fluid Dynamics · Physics 2018-01-17 Changho Kim , Andy Nonaka , John B. Bell , Alejandro L. Garcia , Aleksandar Donev

The diffusion of a bulk absorbed gas species out of spherical pebbles is studied analytically, stressing the usefulness of the time integral of the diffusion coefficient for analysis of arbitrary temperature schedule experiments. Highly…

Materials Science · Physics 2009-11-13 Ricardo E. Avila

We study the question of periodic homogenization of a variably scaled reaction-diffusion problem with non-linear drift posed for a domain crossed by a flat composite thin layer. The structure of the non-linearity in the drift was obtained…

Analysis of PDEs · Mathematics 2021-07-20 Vishnu Raveendran , Emilio N. M. Cirillo , Ida de Bonis , Adrian Muntean

We study the homogenization of a steady diffusion equation in a highly heterogeneous medium made of two subregions separated by a periodic barrier through which the flow is proportional to the jump of the temperature by a layer conductance…

Analysis of PDEs · Mathematics 2008-11-08 Abdelhamid Ainouz

We study the effects of fast spatial movement of molecules on the dynamics of chemical species in a spatially heterogeneous chemical reaction network using a compartment model. The reaction networks we consider are either single- or…

Probability · Mathematics 2015-10-27 Peter Pfaffelhuber , Lea Popovic

We study the transport properties of a system of active particles moving at constant speed in an heterogeneous two-dimensional space. The spatial heterogeneity is modeled by a random distribution of obstacles, which the active particles…

Biological Physics · Physics 2013-10-23 Oleksandr Chepizhko , Fernando Peruani

In this work, we study the effective behavior of a two-dimensional variational model within finite crystal plasticity for high-contrast bilayered composites. Precisely, we consider materials arranged into periodically alternating thin…

Analysis of PDEs · Mathematics 2019-02-01 Elisa Davoli , Rita Ferreira , Carolin Kreisbeck

Diffusion preserves the positivity of concentrations, therefore, multicomponent diffusion should be nonlinear if there exist non-diagonal terms. The vast variety of nonlinear multicomponent diffusion equations should be ordered and special…

Materials Science · Physics 2015-03-17 A. N. Gorban , H. P. Sargsyan , H. A. Wahab

We propose an alternative method for one-dimensional continuum diffusion models with spatially variable (heterogeneous) diffusivity. Our method, which extends recent work on stochastic diffusion, assumes the constant-coefficient homogenized…

Computational Physics · Physics 2019-12-18 Elliot J. Carr

This paper addresses optimal design problems governed by multi-state stationary diffusion equations, aiming at the simultaneous optimization of the domain shape and the distribution of two isotropic materials in prescribed proportions.…

Optimization and Control · Mathematics 2026-02-19 Marko Erceg , Petar Kunštek , Marko Vrdoljak

Dynamic heterogeneity, believed to be one of the hallmarks of the dynamics of supercooled liquids, is expected to affect the diffusion of the particles comprising the liquid. We have carried out extensive molecular dynamics simulations of…

Soft Condensed Matter · Physics 2019-12-23 Rajsekhar Das , Chandan Dasgupta , Smarajit Karmakar

High-frequency homogenization is used to study dispersive media, containing inclusions placed periodically, for which the properties of the material depend on the frequency (Lorentz or Drude model with damping, for example). Effective…

Classical Physics · Physics 2023-08-21 Marie Touboul , Benjamin Vial , Raphaël Assier , Sébastien Guenneau , Richard Craster

Granular intrusion is commonly observed in natural and human-made settings. Unlike typical solids and fluids, granular media can simultaneously display fluid-like and solid-like characteristics in a variety of intrusion scenarios. This…

Soft Condensed Matter · Physics 2021-07-16 Shashank Agarwal , Andras Karsai , Daniel I Goldman , Ken Kamrin

We develop a physiologically-based lattice model for the transport and metabolism of drugs in the functional unit of the liver, called the lobule. In contrast to earlier studies, we have emphasized the dominant role of convection in…

Biological Physics · Physics 2011-11-07 Vahid Rezania , Rebeccah E. Marsh , Dennis Coombe , Jack A. Tuszynski

Generative models hold the promise of significantly expediting the materials design process when compared to traditional human-guided or rule-based methodologies. However, effectively generating high-quality periodic structures of materials…

Materials Science · Physics 2024-08-15 Anshuman Sinha , Shuyi Jia , Victor Fung

We consider a composite medium, which consists of a homogeneous matrix containing a statistically homogeneous set of multimodal spherical inclusions. This model is used to represent the morphology of heterogeneous solid propellants (HSP)…

Materials Science · Physics 2015-03-20 V. A. Buryachenko , T. L. Jackson , G. Amadio

Simulating flow in a highly heterogeneous reservoir with multiscale characteristics could be considerably demanding. To tackle this problem, we propose a numerical scheme coupling the Generalized Multiscale Finite Element Method (GMsFEM)…

Numerical Analysis · Mathematics 2018-10-31 Min Wang , Siu Wun Cheung , Eric T. Chung , Maria Vasilyeva , Yuhe Wang