Related papers: Soft and stiff normal modes in floppy colloidal sq…
The sol-gel transition is studied in two purely entropic models consisting of hard spheres in continuous three-dimensional space, with a fraction $p$ of nearest neighbor spheres tethered by inextensible bonds. When all the tethers are…
Simple nonlinear dynamical systems with multiple stable stationary states are often taken as models for switchlike biological systems. This paper considers the interaction of multiple such simple multistable systems when they are embedded…
The penetrable-sphere model has been introduced in the literature to describe the peculiar thermodynamic behavior of some colloidal systems. In this model the interaction potential is $\phi(r)=\epsilon>0$ if the two spheres are overlapped…
The cytoskeleton is an inhomogeneous network of semi-flexible filaments, which are involved in a wide variety of active biological processes. Although the cytoskeletal filaments can be very stiff and embedded in a dense and cross-linked…
We have developed different network approaches to complex patterns of frictional interfaces (contact areas developments). Here, we analyze the dynamics of static friction. We found, under the correlation measure, the fraction of triangles…
We study a slender filament beating in a viscous fluid with novel curvature-dependent bending stiffness. Our numerical and experimental investigations reveal that such differential stiffness can sustain planar bending waves far along…
Whether live cell membranes show miscibility phase transitions (MPTs), and if so, how they fluctuate near the transitions remain outstanding unresolved issues in physics and biology alike. Motivated by these questions we construct a generic…
We develop a theory of weakly interacting fermionic atoms in shaken optical lattices based on the orbital mixing in the presence of time-periodic modulations. Specifically, we focus on fermionic atoms in circularly shaken square lattice…
We present a simple coarse-grained bead-and-spring model for lipid bilayers. The system has been developed to reproduce the main (gel-liquid) transition of biological membranes on intermediate length scales of a couple of nanometres and is…
We investigate a novel higher-order topological behavior in elastic lattices characterized by nonsymmorphic symmetries. In the theoretical spring-mass lattice, altering the vertex mass allows for fine-tuning of the topological features…
We use first-principles calculations based on density functional theory to determine and understand the driving force of the observed stacking fault expansion in SiC. We verify the suggestion based on recent experiments that the free energy…
Electrically conducting polymers with mechanical adaptability are essential for flexible electronics, yet most suffer structural degradation under rapid deformation. In this study, multiscale coarse-grained (MSCG) simulations are used to…
We investigate theoretically the elliptical shapes of soft colloids in freely standing smectic C films, that have been reported recently. The colloids favour parallel alignment of the liquid crystal molecules at their surfaces and, for…
We study membrane-protein interactions and membrane-mediated protein-protein interactions by Monte Carlo simulations of a generic coarse-grained model for lipid bilayers with cylindrical hydrophobic inclusions. The strength of the…
A microscopic model of a surface polymer network - membrane system is introduced, with contact polymer surface interactions that can be either repulsive or attractive and sliplinks of functionality four randomly distributed over the…
We show that classical many-particle systems interacting with certain soft pair interactions in two dimensions exhibit novel low-temperature behaviors. Ground states span from disordered to crystalline. At some densities, a large fraction…
Standard Spiking Neural Network (SNN) models typically neglect metabolic constraints, treating neurons as energetically unconstrained components. We bridge this gap by implementing a conductance-based leaky integrate-and-fire (gLIF)…
Dynamic rupture propagation along an interface between two different elastic solids under shear dominated loading is studied numerically by a 2-D lattice particle model (LPM). The configuration of the lattice particle model consists of two…
Recent experiments revealed the importance of higher-band effects for the Mott insulator (MI) -- superfluid transition (SF) of ultracold bosonic atoms or mixtures of bosons and fermions in deep optical lattices [Best \emph{et al.}, PRL…
In the coarse grained Brownian Dynamics simulation method the many solvent molecules are replaced by random thermal kicks and an effective friction acting on the particles of interest. For Brownian Dynamics the friction has to be so strong…