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Quantitative, volumetric analysis of Magnetic Resonance Imaging (MRI) is a fundamental way researchers study the brain in a host of neurological conditions including normal maturation and aging. Despite the availability of open-source brain…

Quantitative Methods · Quantitative Biology 2019-11-15 Aakash Kaku , Chaitra V. Hegde , Jeffrey Huang , Sohae Chung , Xiuyuan Wang , Matthew Young , Alireza Radmanesh , Yvonne W. Lui , Narges Razavian

We present Hybrid-CSR, a geometric deep-learning model that combines explicit and implicit shape representations for cortical surface reconstruction. Specifically, Hybrid-CSR begins with explicit deformations of template meshes to obtain…

Computer Vision and Pattern Recognition · Computer Science 2023-07-25 Shanlin Sun , Thanh-Tung Le , Chenyu You , Hao Tang , Kun Han , Haoyu Ma , Deying Kong , Xiangyi Yan , Xiaohui Xie

Deformable image registration (DIR) is a crucial and challenging technique for aligning anatomical structures in medical images and is widely applied in diverse clinical applications. However, existing approaches often struggle to capture…

Image and Video Processing · Electrical Eng. & Systems 2025-08-26 Shayan Kebriti , Shahabedin Nabavi , Ali Gooya

Analyzing and predicting brain aging is essential for early prognosis and accurate diagnosis of cognitive diseases. The technique of neuroimaging, such as Magnetic Resonance Imaging (MRI), provides a noninvasive means of observing the aging…

Image and Video Processing · Electrical Eng. & Systems 2022-12-06 Jingru Fu , Antonios Tzortzakakis , José Barroso , Eric Westman , Daniel Ferreira , Rodrigo Moreno

Recent years have witnessed rapid advancements in 3D scanning technologies, with applications spanning VR/AR, digital human creation, and medical imaging. Structured-light scanning with phase-shifting techniques is preferred for its use of…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Xiang Gao , Xinmu Wang , Zhou Zhao , Junqi Huang , Xianfeng David Gu

Understanding individual differences in cortical structure is key to advancing diagnostics in neurology and psychiatry. Reference models aid in detecting aberrant cortical thickness, yet site-specific biases limit their direct application…

Computer Vision and Pattern Recognition · Computer Science 2025-09-24 Christian Wachinger , Dennis Hedderich , Melissa Thalhammer , Fabian Bongratz

Traditional neuroimage analysis pipelines involve computationally intensive, time-consuming optimization steps, and thus, do not scale well to large cohort studies with thousands or tens of thousands of individuals. In this work we propose…

Image and Video Processing · Electrical Eng. & Systems 2020-06-11 Leonie Henschel , Sailesh Conjeti , Santiago Estrada , Kersten Diers , Bruce Fischl , Martin Reuter

Purpose: Recently the authors presented a technique that allows corneal thickness measurements along any meridian from optical sections obtained using a rotary scanning system. This paper presents 3-D mapping of the corneal thickness and…

General Physics · Physics 2007-05-23 S. Franco , J. B. Almeida , M. Parafita

Estimating displacement vector field via a cost volume computed in the feature space has shown great success in image registration, but it suffers excessive computation burdens. Moreover, existing feature descriptors only extract local…

Computer Vision and Pattern Recognition · Computer Science 2025-06-30 Zi Li , Lin Tian , Tony C. W. Mok , Xiaoyu Bai , Puyang Wang , Jia Ge , Jingren Zhou , Le Lu , Xianghua Ye , Ke Yan , Dakai Jin

Due to the low signal-to-noise ratio and limited resolution of functional MRI data, and the high complexity of natural images, reconstructing a visual stimulus from human brain fMRI measurements is a challenging task. In this work, we…

Computer Vision and Pattern Recognition · Computer Science 2023-03-07 Zijin Gu , Keith Jamison , Amy Kuceyeski , Mert Sabuncu

We present cortical surface parcellation using spherical deep convolutional neural networks. Traditional multi-atlas cortical surface parcellation requires inter-subject surface registration using geometric features with high processing…

The recovery of morphologically accurate anatomical images from deformed ones is challenging in ultrasound (US) image acquisition, but crucial to accurate and consistent diagnosis, particularly in the emerging field of computer-assisted…

Image and Video Processing · Electrical Eng. & Systems 2023-08-09 Zhongliang Jiang , Yue Zhou , Dongliang Cao , Nassir Navab

We propose approaches based on deep learning to localize objects in images when only a small training dataset is available and the images have low quality. That applies to many problems in medical image processing, and in particular to the…

Computer Vision and Pattern Recognition · Computer Science 2018-11-20 Aaron Pries , Peter J. Schreier , Artur Lamm , Stefan Pede , Jürgen Schmidt

In this paper we introduce CorticalFlow, a new geometric deep-learning model that, given a 3-dimensional image, learns to deform a reference template towards a targeted object. To conserve the template mesh's topological properties, we…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Léo Lebrat , Rodrigo Santa Cruz , Frédéric de Gournay , Darren Fu , Pierrick Bourgeat , Jurgen Fripp , Clinton Fookes , Olivier Salvado

Intracortical US imaging extends B-mode imaging into bone using a dedicated image reconstruction algorithm that corrects for refraction at the bone-soft tissue interfaces. It has shown promising results in a few healthy, predominantly young…

Medical Physics · Physics 2025-02-14 Amadou S. Dia , Guillaume Renaud , Christine Chappard , Quentin Grimal

Medical image registration is a critical process that aligns various patient scans, facilitating tasks like diagnosis, surgical planning, and tracking. Traditional optimization based methods are slow, prompting the use of Deep Learning (DL)…

Computer Vision and Pattern Recognition · Computer Science 2024-10-30 Amin Ranem , John Kalkhof , Anirban Mukhopadhyay

Retinotopic mapping aims to uncover the relationship between visual stimuli on the retina and neural responses on the visual cortical surface. This study advances retinotopic mapping by applying diffeomorphic registration to the 3T NYU…

Image and Video Processing · Electrical Eng. & Systems 2024-05-06 Negar Jalili-Mallak , Yanshuai Tu , Zhong-Lin Lu , Yalin Wang

Functional magnetic resonance imaging techniques benefit from echo-planar imaging's fast image acquisition but are susceptible to inhomogeneities in the main magnetic field, resulting in geometric distortion and signal loss artifacts in the…

Image and Video Processing · Electrical Eng. & Systems 2024-03-01 Marina Manso Jimeno , Keren Bachi , George Gardner , Yasmin L. Hurd , John Thomas Vaughan , Sairam Geethanath

Deepfakes pose significant security and privacy threats through malicious facial manipulations. While robust watermarking can aid in authenticity verification and source tracking, existing methods often lack the sufficient robustness…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Chen Sun , Haiyang Sun , Zhiqing Guo , Yunfeng Diao , Liejun Wang , Dan Ma , Gaobo Yang , Keqin Li

Ultrasound imaging of the cortex of long bones may enable the measurement of the cortical thickness and the ultrasound wave speed in cortical bone tissue. However, with bone loss, the cortical porosity and the size of the pores increase,…

Medical Physics · Physics 2025-07-14 Amadou S. Dia , Quentin Grimal , Guillaume Renaud
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