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We aim to learn the functional co-response group: a group of taxa whose co-response effect (the representative characteristic of the group showing the total topological abundance of taxa) co-responds (associates well statistically) to a…

Machine Learning · Computer Science 2024-07-19 Nan Chen , Merlijn Schram , Doina Bucur

A wide range of data that appear in scientific experiments and simulations are multivariate or multifield in nature, consisting of multiple scalar fields. Topological feature search of such data aims to reveal important properties useful to…

Computational Geometry · Computer Science 2024-06-06 Tripti Agarwal , Amit Chattopadhyay , Vijay Natarajan

In eukaryotic cells, mitochondria form networks that range from highly fused interconnected structures to fragmented populations of individual organelles that undergo transient interactions. These structures can be described as temporal…

Biological Physics · Physics 2026-02-24 Keaton B. Holt , Camryn Zurita , Lizzy Teryoshin , Samantha C. Lewis , Elena F. Koslover

In this paper, we propose a novel framework for dynamical analysis of human actions from 3D motion capture data using topological data analysis. We model human actions using the topological features of the attractor of the dynamical system.…

Computational Geometry · Computer Science 2016-03-18 Vinay Venkataraman , Karthikeyan Natesan Ramamurthy , Pavan Turaga

A deep understanding of the dynamics of the human nervous system requires the simultaneous study of multiple spatiotemporal scales from the level of neurotransmitters up to the level of human cultures. This is likely impossible for…

Neurons and Cognition · Quantitative Biology 2023-01-24 William Sulis

Insects use visual information to estimate angular velocity of retinal image motion, which determines a variety of flight behaviours including speed regulation, tunnel centring and visual navigation. For angular velocity estimation,…

Neurons and Cognition · Quantitative Biology 2019-04-15 Huatian Wang , Qinbing Fu , Hongxin Wang , Jigen Peng , Paul Baxter , Cheng Hu , Shigang Yue

We investigate how the compositeness of a quantum system influences the characteristic time of equilibration. We study the dynamics of open composite quantum systems strongly coupled to the environment after a quantum perturbation…

High Energy Physics - Theory · Physics 2018-09-05 Irina Aref'eva , Oleg Inozemcev , Igor Volovich

A range of systems across the social and natural sciences generate datasets consisting of interactions between two distinct categories of items at various instances in time. Online shopping, for example, generates purchasing events of the…

Social and Information Networks · Computer Science 2024-02-13 Alec Kirkley

Human social interactions are typically recorded as time-specific dyadic interactions, and represented as evolving (temporal) networks, where links are activated/deactivated over time. However, individuals can interact in groups of more…

Physics and Society · Physics 2022-11-03 Alberto Ceria , Huijuan Wang

Social insect colonies routinely face large vertebrate predators, against which they need to mount a collective defense. To do so, honeybees use an alarm pheromone that recruits nearby bees into mass stinging of the perceived threat. This…

Populations and Evolution · Quantitative Biology 2021-06-01 Andrea López-Incera , Morgane Nouvian , Katja Ried , Thomas Müller , Hans J. Briegel

Collectives are often able to process information in a distributed fashion, surpassing each individual member's processing capacity. In fission-fusion dynamics, where group members come together and split from others often, sharing…

Quantitative Methods · Quantitative Biology 2025-09-09 Gabriel Ramos-Fernandez , Ross S. Walker , Matthew J. Silk , Denis Boyer , Sandra E. Smith-Aguilar

Intercellular exchange networks are essential for the adaptive capabilities of populations of cells. While diffusional exchanges have traditionally been difficult to map, recent advances in nanotechnology enable precise probing of exchange…

Statistical Mechanics · Physics 2024-12-13 Luís C. F. Latoski , Andrea De Martino , Daniele De Martino

Change detection in heterogeneous multitemporal satellite images is a challenging and still not much studied topic in remote sensing and earth observation. This paper focuses on comparison of image pairs covering the same geographical area…

Computer Vision and Pattern Recognition · Computer Science 2017-02-13 Luigi Tommaso Luppino , Stian Normann Anfinsen , Gabriele Moser , Robert Jenssen , Filippo Maria Bianchi , Sebastiano Serpico , Gregoire Mercier

In this paper, we consider a multi-agent system consisting of mobile agents with second-order dynamics. The communication network is determined by the so-called topological interaction rule: agents interact with a fixed number of their…

Optimization and Control · Mathematics 2013-11-26 Samuel Martin

Cooperation is ubiquitous in biological and social systems. Previous studies revealed that a preference toward similar appearance promotes cooperation, a phenomenon called tag-mediated cooperation or communitarian cooperation. This effect…

Populations and Evolution · Quantitative Biology 2017-04-06 Genki Ichinose , Masaya Saito , Hiroki Sayama , Hugues Bersini

Understanding pattern formation in crossing pedestrian flows is essential for analyzing and managing high-density crowd dynamics in urban environments. This study presents two complementary methodological approaches to detect and…

Physics and Society · Physics 2025-04-24 Piotr Nyczka , Pratik Mullick

We propose a Bayesian hierarchical model to address the challenge of spatial misalignment in spatio-temporal data obtained from in situ and satellite sources. The model is fit using the INLA-SPDE approach, which provides efficient…

Methodology · Statistics 2024-01-10 Shiyu He , Samuel W. K. Wong

Predicting the fate of ecologies is a daunting, albeit extremely important, task. As part of this task one needs to develop an understanding of the organization, hierarchies, and correlations among the species forming the ecology. Focusing…

Populations and Evolution · Quantitative Biology 2016-08-31 Ahmed Roman , Debanjan Dasgupta , Michel Pleimling

Diffusion condensation is a dynamic process that yields a sequence of multiscale data representations that aim to encode meaningful abstractions. It has proven effective for manifold learning, denoising, clustering, and visualization of…

Machine Learning · Computer Science 2023-01-06 Guillaume Huguet , Alexander Tong , Bastian Rieck , Jessie Huang , Manik Kuchroo , Matthew Hirn , Guy Wolf , Smita Krishnaswamy

We investigate the structural and topological properties of hydrophobic homopolymer chains in aqueous solutions using molecular dynamics simulations and circuit topology (CT) analysis. By combining geometric observables, such as radius of…

Soft Condensed Matter · Physics 2026-01-01 Junichi Komatsu , Kenichiro Koga , Jonas Berx
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