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We address the role of topology in the energy transport process that occurs in networks of photosynthetic complexes. We take inspiration from light harvesting networks present in purple bacteria and simulate an incoherent dissipative energy…

Biological Physics · Physics 2013-05-30 Michele Allegra , Paolo Giorda

We present a family of algorithms for the fast determination of reaction paths and barriers in phase space and the computation of the corresponding rates. The method requires the reaction times be large compared to the microscopic time,…

Statistical Mechanics · Physics 2009-11-10 Sorin Tanase-Nicola , Jorge Kurchan

In this paper, we present a new approach of distributed clustering for spatial datasets, based on an innovative and efficient aggregation technique. This distributed approach consists of two phases: 1) local clustering phase, where each…

Databases · Computer Science 2018-02-05 Malika Bendechache , Nhien-An Le-Khac , M-Tahar Kechadi

Imitation is a basic updating mechanism for strategy evolution in structured populations, determining how individuals sample social information and translate it into behavioral changes. Higher-order networks, such as hypergraphs, generalize…

Physics and Society · Physics 2026-02-11 Bingxin Lin , Lei Zhou , Hao Fang

We present a novel framework exploiting the cascade of phase transitions occurring during a simulated annealing of the Expectation-Maximisation algorithm to cluster datasets with multi-scale structures. Using the weighted local covariance,…

Machine Learning · Statistics 2021-01-13 T. Bonnaire , A. Decelle , N. Aghanim

The search for materials with topological properties is an ongoing effort. In this article we propose a systematic statistical method supported by machine learning techniques that is capable of constructing topological models for a generic…

Mesoscale and Nanoscale Physics · Physics 2021-02-18 Thomas Mertz , Roser Valentí

Information has intrinsic geometric and topological structure, arising from relative relationships beyond absolute values or types. For instance, the fact that two people share a meal describes a relationship independent of the meal's…

Combinatorics · Mathematics 2017-12-13 Michael Erdmann

Understanding both global and layer-specific group structures is useful for uncovering complex patterns in networks with multiple interaction types. In this work, we introduce a new model, the hierarchical multiplex stochastic blockmodel…

We propose a practical computational framework for detecting structural changes in parameter-dependent topological data. In many applications, such as time-series data analysis, anomaly detection, and monitoring of systems under changing…

Algebraic Topology · Mathematics 2026-05-28 Satoshi Kanno , Rei Nishimura , Hiroshi Yamauchi , Yoshi-aki Shimada

Homophily -- the tendency of individuals to interact with similar others -- shapes how networks form and function. Yet existing approaches typically collapse homophily to a single scale, either one parameter for the whole network or one per…

Physics and Society · Physics 2025-12-16 Abbas K. Rizi , Riccardo Michielan , Clara Stegehuis , Mikko Kivelä

In a recent paper List, Elsholtz and Seeley [Phil. Trans. Roy. Soc. B. 364 (2009) 755] have devised an agent-based model of the the nest-choice dynamics in swarms of honeybees, and have concluded that both interdependence and independence…

Populations and Evolution · Quantitative Biology 2009-09-10 Tobias Galla

We propose a novel probabilistic framework to model continuous-time interaction events data. Our goal is to infer the \emph{implicit} community structure underlying the temporal interactions among entities, and also to exploit how the…

Social and Information Networks · Computer Science 2020-06-24 Sikun Yang , Heinz Koeppl

People organize in groups and contagions spread across them. A simple stochastic process, yet complex to model due to dynamical correlations within and between groups. Moreover, groups can evolve if agents join or leave in response to…

Physics and Society · Physics 2025-05-22 Giulio Burgio , Guillaume St-Onge , Laurent Hébert-Dufresne

Topologically ordered quantum matter exhibits intriguing long-range patterns of entanglement, which reveal themselves in subsystem entropies. However, measuring such entropies, which can be used to certify topological order, on large…

Quantum Physics · Physics 2024-08-26 Robert Ott , Torsten V. Zache , Nishad Maskara , Mikhail D. Lukin , Peter Zoller , Hannes Pichler

The structure of real-world networks is usually difficult to characterize owing to the variation of topological scales, the nondyadic complex interactions, and the fluctuations in the network. We aim to address these problems by introducing…

Social and Information Networks · Computer Science 2019-09-25 Quoc Hoan Tran , Van Tuan Vo , Yoshihiko Hasegawa

Many complex systems can be modeled by temporal networks, whose organization often evolves through distinct structural phases. Detecting the change points that delimit these phases is both important and challenging. In this work, we extend…

Social and Information Networks · Computer Science 2026-05-22 Samuel Koovely , Alexandre Bovet

The analysis of spatio-temporal data presents significant challenges due to the complexity and heterogeneity of movement patterns. This project proposes a data analytics tool that combines data visualization and statistical computation to…

Human-Computer Interaction · Computer Science 2025-08-01 Ivan A. Hanono Cozzetti , Ahmad Abdou

This paper proposes a novel approach for detecting the topology of distribution networks based on the analysis of time series measurements. The time-based analysis approach draws on data from high-precision phasor measurement units (PMUs or…

Systems and Control · Computer Science 2015-04-23 Guido Cavraro , Reza Arghandeh , Alexandra von Meier

Numerical models indicate that collective animal behaviour may emerge from simple local rules of interaction among the individuals. However, very little is known about the nature of such interaction, so that models and theories mostly rely…

Populations and Evolution · Quantitative Biology 2009-11-13 M. Ballerini , N. Cabibbo , R. Candelier , A. Cavagna , E. Cisbani , I. Giardina , V. Lecomte , A. Orlandi , G. Parisi , A. Procaccini , M. Viale , V. Zdravkovic

Topological Data Analysis (TDA) can be used to detect and characterize holes in an image, such as zero-dimensional holes (connected components) or one-dimensional holes (loops). However, there is currently no widely accepted statistical…

Methodology · Statistics 2025-08-26 Susan Glenn , Jessi Cisewski-Kehe , Jun Zhu , William M Bement