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A level-set method is developed for numerically capturing the equilibrium solute-solvent interface that is defined by the recently proposed variational implicit solvent model (Dzubiella, Swanson, and McCammon, Phys. Rev. Lett. {\bf 104},…

Chemical Physics · Physics 2009-11-13 L. -T. Cheng , J. Dzubiella , J. A. McCammon , B. Li

We explore a new way to handle flux boundary conditions imposed on level sets. The proposed approach is a diffuse interface version of the shifted boundary method (SBM) for continuous Galerkin discretizations of conservation laws in…

Numerical Analysis · Mathematics 2022-05-11 Dmitri Kuzmin , Jan-Phillip Bäcker

Deep learning methods, which exploit auto-differentiation to compute derivatives without dispersion or dissipation errors, have recently emerged as a compelling alternative to classical mesh-based numerical schemes for solving hyperbolic…

Numerical Analysis · Mathematics 2025-03-18 Qi Sun , Zhenjiang Liu , Lili Ju , Xuejun Xu

We introduce a method-of-lines formulation of the closest point method, a numerical technique for solving partial differential equations (PDEs) defined on surfaces. This is an embedding method, which uses an implicit representation of the…

Numerical Analysis · Mathematics 2013-07-23 Ingrid von Glehn , Thomas März , Colin B. Macdonald

In this paper we present an approach to approximate numerically the solution of coupled hyperbolic conservation laws. The coupling is achieved through a fixed interface, in which interface conditions are linking the traces of both sides.…

Numerical Analysis · Mathematics 2016-03-18 Nina Aguillon , Raul Borsche

We consider conservation laws on moving hypersurfaces. In this work the velocity of the surface is prescribed. But one may think of the velocity to be given by PDEs in the bulk phase. We prove existence and uniqueness for a scalar…

Analysis of PDEs · Mathematics 2014-01-29 Gerhard Dziuk , Dietmar Kröner , Thomas Müller

A numerical method using implicit surface representations is proposed to solve the linearized Poisson-Boltzmann equations that arise in mathematical models for the electrostatics of molecules in solvent. The proposed method used an implicit…

Numerical Analysis · Mathematics 2018-04-04 Yimin Zhong , Kui Ren , Richard Tsai

Finding meaningful representations and distances of hierarchical data is important in many fields. This paper presents a new method for hierarchical data embedding and distance. Our method relies on combining diffusion geometry, a central…

Machine Learning · Computer Science 2023-05-31 Ya-Wei Eileen Lin , Ronald R. Coifman , Gal Mishne , Ronen Talmon

The level-set method is a popular interface tracking method in two-phase flow simulations. An often-cited reason for using it is that the method naturally handles topological changes in the interface, e.g. merging drops, due to the implicit…

Fluid Dynamics · Physics 2014-09-29 Åsmund Ervik , Karl Yngve Lervåg , Svend Tollak Munkejord

In this paper, we introduce a novel way to represent the interface for two-phase flows with phase change. We combine a level-set method with a Cartesian embedded boundary method and take advantage of both. This is part of an effort to…

Numerical Analysis · Mathematics 2022-12-28 A. Limare , S. Popinet , C. Josserand , Z. Xue , A. Ghigo

We present an enhanced immersed interface method for simulating incompressible fluid flows in thin gaps between closely spaced immersed boundaries. This regime, common in engineered structures such as including tribological interfaces and…

Fluid Dynamics · Physics 2026-03-17 Michael J. Facci , Qi Sun , Boyce E. Griffith

Level set method, introduced by Osher and Sethian [1], is a highly robust and accurate computational technique for tracking of moving interfaces in etching, deposition and photolithography processes. It originates from the idea to view the…

Plasma Physics · Physics 2007-05-23 Branislav Radenovic , S. J. Kim , J. K. Lee

The immersed boundary method is a mathematical formulation and numerical method for solving fluid-structure interaction problems. For many biological problems, such as models that include the cell membrane, the immersed structure is a…

Numerical Analysis · Mathematics 2018-06-07 Ondrej Maxian , Andrew T. Kassen , Wanda Strychalski

We consider entropy solutions to the initial value problem associated with scalar nonlinear hyperbolic conservation laws posed on the two-dimensional sphere. We propose a finite volume scheme which relies on a web-like mesh made of segments…

Numerical Analysis · Mathematics 2015-05-13 Matania Ben-Artzi , Joseph Falcovitz , Philippe G. LeFloch

We introduce novel approximate systems for dispersive and diffusive-dispersive equations with nonlinear fluxes. For purely dispersive equations, we construct a first-order, strictly hyperbolic approximation. Local well-posedness of smooth…

Analysis of PDEs · Mathematics 2025-12-05 Rahul Barthwal , Firas Dhaouadi , Christian Rohde

The Immersed Boundary Method (IBM) is one of the popular one-fluid mixed Eulerian-Lagrangian methods to simulate motion of droplets. While the treatment of a moving complex boundary is an extremely time consuming and formidable task in a…

Computational Physics · Physics 2018-07-30 Chia Rui Ong , Hiroaki Miura

We construct simply connected, complete, non-$CMC$ biconservative surfaces in the $3$-dimensional hyperbolic space $\mathbb{H}^3$ in an intrinsic and extrinsic way. We obtain three families of such surfaces, and, for each surface, the set…

Differential Geometry · Mathematics 2019-09-30 Simona Nistor , Cezar Oniciuc

The immersed boundary method is a numerical and mathematical formulation for solving fluid-structure interaction problems. It relies on solving fluid equations on an Eulerian fluid grid and interpolating the resulting velocity back onto…

Numerical Analysis · Mathematics 2020-03-19 Ondrej Maxian , Charles S. Peskin

This series of papers is devoted to the formulation and the approximation of coupling problems for nonlinear hyperbolic equations. The coupling across an interface in the physical space is formulated in term of an augmented system of…

Analysis of PDEs · Mathematics 2021-10-01 Benjamin Boutin , Frédéric Coquel , Philippe G. LeFloch

This paper presents a general and robust method for the fluid-structure interaction of membranes and shells undergoing large displacement and large added-mass effects by coupling an immersed-boundary method with a shell finite-element…

Fluid Dynamics · Physics 2023-08-15 Marin Lauber , Gabriel D. Weymouth , Georges Limbert
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