Related papers: Reversible and Irreversible Trees
Most phylogenetic models assume that the evolutionary process is stationary and reversible. As a result, the root of the tree cannot be inferred as part of the analysis because the likelihood of the data does not depend on the position of…
We show that the existence of a Suslin tree does not necessarily imply that there are uncountable minimal linear orders other than $\omega_1$ and $-\omega_1$, answering a question of J. Baumgartner. This is done by a Jensen-type iteration,…
We construct a large family of normal $\kappa$-complete $\mathbb{R}_\kappa$-embeddable non-special $\kappa^+$-Aronszajn trees which have no club isomorphic subtrees using an instance of the proxy principle of Brodsky-Rinot.
In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…
A hypertree is a connected hypergraph without cycles. Further a hypertree is called an $r$-tree if, additionally, it is $r$-uniform. Note that 2-trees are just ordinary trees. A classical result states that for any 2-tree $T$ with…
We look for partition theorems for large subtrees for suitable uncountable trees and colourings. We concentrate on sub-trees of $^{\kappa \ge} 2$ expanded by a well ordering of each level. Unlike earlier works, we do not ask the embedding…
Let ${\cal T}=(T,w)$ be a weighted finite tree with leaves $1,..., n$.For any $I :=\{i_1,..., i_k \} \subset \{1,...,n\}$, let $D_I ({\cal T})$ be the weight of the minimal subtree of $T$ connecting $i_1,..., i_k$; the $D_{I} ({\cal T})$…
We prove various iteration theorems for forcing classes related to subproper and subcomplete forcing, introduced by Jensen. In the first part, we use revised countable support iterations, and show that 1) the class of subproper,…
A transversal in a rooted tree is any set of nodes that meets every path from the root to a leaf. We let c(T,k) denote the number of transversals of size k in a rooted tree T. We define a partial order on the set of all rooted trees with n…
It is a classical result that any finite tree with positively weighted edges, and without vertices of degree 2, is uniquely determined by the weighted path distance between each pair of leaves. Moreover, it is possible for a (small) strict…
Reconstructing the tree of life from molecular sequences is a fundamental problem in computational biology. Modern data sets often contain a large number of genes, which can complicate the reconstruction problem due to the fact that…
We analyse the complexity of the class of (special) Aronszajn, Suslin and Kurepa trees in the projective hierarchy of the higher Baire-space $\omega_1^{\omega_1}$. First, we will show that none of these classes have the Baire property…
A uniform recursive tree on $n$ vertices is a random tree where each possible $(n-1)!$ labeled recursive rooted tree is selected with equal probability. In this paper we introduce and study weighted trees, a non-uniform recursive tree model…
We give a characterization of the strong degrees of categoricity of computable structures greater or equal to $\mathbf 0''$. They are precisely the \emph{treeable} degrees -- the least degrees of paths through computable trees -- that…
Given a tree $T$ of height $\omega_1$, we say that a ladder system colouring $(f_\alpha)_{\alpha\in \lim\omega_1}$ has a $T$-uniformization if there is a function $\varphi$ defined on a subtree $S$ of $T$ so that for any $s\in S_\alpha$ of…
Let $X$ be a finite set. We give criterion to say if a system of trees ${\cal P}=\{T_i\}_i$ with leaf sets $L(T_i) \in {X \choose 5}$ can be amalgamated into a supertree, that is, if there exists a tree $T$ with $L(T)=X$ such that $T$…
An electrical network with the structure of a random tree is considered: starting from a root vertex, in one iteration each leaf (a vertex with zero or one adjacent edges) of the tree is extended by either a single edge with probability $p$…
Ground Tree Rewrite Systems with State are known to have an undecidable control state reachability problem. Taking inspiration from the recent introduction of scope-bounded multi-stack pushdown systems, we define Senescent Ground Tree…
This paper introduces and studies nil-reversible rings wherein we call a ring R nil-reversible if the left and right annihilators of every nilpotent element of R are equal. Reversible rings (and hence reduced rings) form a proper subclass…