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The tree inclusion problem is, given two node-labeled trees $P$ and $T$ (the ``pattern tree'' and the ``target tree''), to locate every minimal subtree in $T$ (if any) that can be obtained by applying a sequence of node insertion operations…

Data Structures and Algorithms · Computer Science 2021-06-16 Tatsuya Akutsu , Jesper Jansson , Ruiming Li , Atsuhiro Takasu , Takeyuki Tamura

Given two rooted phylogenetic trees on the same set of taxa X, the Maximum Agreement Forest problem (MAF) asks to find a forest that is, in a certain sense, common to both trees and has a minimum number of components. The Maximum Acyclic…

Combinatorics · Mathematics 2012-12-27 Leo van Iersel , Steven Kelk , Nela Lekić , Leen Stougie

The emergence of massive graph data sets requires fast mining algorithms. Centrality measures to identify important vertices belong to the most popular analysis methods in graph mining. A measure that is gaining attention is forest…

Data Structures and Algorithms · Computer Science 2021-01-18 Alexander van der Grinten , Eugenio Angriman , Maria Predari , Henning Meyerhenke

We study the incremental knapsack problem, where one wishes to sequentially pack items into a knapsack whose capacity expands over a finite planning horizon, with the objective of maximizing time-averaged profits. While various…

Data Structures and Algorithms · Computer Science 2020-10-16 Ali Aouad , Danny Segev

The current best approximation algorithms for $k$-median rely on first obtaining a structured fractional solution known as a bi-point solution, and then rounding it to an integer solution. We improve this second step by unifying and…

Data Structures and Algorithms · Computer Science 2022-10-25 Kishen N. Gowda , Thomas Pensyl , Aravind Srinivasan , Khoa Trinh

One of the most elementary spreading models on graphs can be described by a fire spreading from a burning vertex in discrete time steps. At each step, all neighbors of burning vertices catch fire. A well-studied extension to model fire…

Data Structures and Algorithms · Computer Science 2025-12-22 Jannis Blauth , Christian Nöbel , Rico Zenklusen

We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Ming-Yang Kao , Tak-Wah Lam , Wing-Kin Sung , Hing-Fung Ting

The ancestral maximum-likelihood and phylogeography problems are two fundamental problems involving evolutionary studies. The ancestral maximum-likelihood problem involves identifying a rooted tree alongside internal node sequences that…

Data Structures and Algorithms · Computer Science 2023-08-15 Mohammad-Hadi Foroughmand-Araabi , Sama Goliaei , Kasra Alishahi

We propose a novel unsupervised outlier detection method based on Randomized Principal Component Analysis (PCA). Motivated by the performance of Randomized PCA (RPCA) Forest in approximate K-Nearest Neighbor (KNN) search, we develop a novel…

Machine Learning · Computer Science 2026-05-12 Muhammad Rajabinasab , Farhad Pakdaman , Moncef Gabbouj , Peter Schneider-Kamp , Arthur Zimek

Given a reference set $R$ of $n$ points and a query set $Q$ of $m$ points in a metric space, this paper studies an important problem of finding $k$-nearest neighbors of every point $q \in Q$ in the set $R$ in a near-linear time. In the…

Computational Geometry · Computer Science 2024-03-05 Yury Elkin , Vitaliy Kurlin

The k-means clustering algorithm is a popular algorithm that partitions data into k clusters. There are many improvements to accelerate the standard algorithm. Most current research employs upper and lower bounds on point-to-cluster…

Machine Learning · Computer Science 2024-10-22 Andreas Lang , Erich Schubert

We prove that any polynomial-time $\alpha(n)$-approximation algorithm for the $n$-vertex metric asymmetric Traveling Salesperson Problem yields a polynomial-time $O(\alpha(C))$-approximation algorithm for the mixed and windy Capacitated Arc…

Data Structures and Algorithms · Computer Science 2019-11-14 René van Bevern , Christian Komusiewicz , Manuel Sorge

We propose a $O(\log k \log n)$-competitive randomized algorithm for online node-weighted Steiner forest. This is essentially optimal and significantly improves over the previous bound of $O(\log^2 k \log n)$ by Hajiaghayi et al. [2017]. In…

Data Structures and Algorithms · Computer Science 2024-10-29 Sander Borst , Marek Eliáš , Moritz Venzin

The classical algorithm of Agrawal, Klein and Ravi [SIAM J. Comput., 24 (1995), pp. 440-456], stated in the setting of the primal-dual schema by Goemans and Williamson [SIAM J. Comput., 24 (1995), pp. 296-317] uses the undirected cut…

Data Structures and Algorithms · Computer Science 2019-11-19 Ali Çivril

A 2.75-approximation algorithm is proposed for the unconstrained traveling tournament problem, which is a variant of the traveling tournament problem. For the unconstrained traveling tournament problem, this is the first proposal of an…

Data Structures and Algorithms · Computer Science 2016-01-15 Shinji Imahori , Tomomi Matsui , Ryuhei Miyashiro

In the Min $k$-Cut problem, input is an edge weighted graph $G$ and an integer $k$, and the task is to partition the vertex set into $k$ non-empty sets, such that the total weight of the edges with endpoints in different parts is minimized.…

Data Structures and Algorithms · Computer Science 2020-09-15 Daniel Lokshtanov , Saket Saurabh , Vaishali Surianarayanan

In the $k$-edge-connected spanning subgraph ($k$ECSS) problem, our goal is to compute a minimum-cost sub-network that is resilient against up to $k$ link failures: Given an $n$-node $m$-edge graph with a cost function on the edges, our goal…

The {\sc $k$-Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) with at least $k$ leaves in a given digraph. The problem has recently received much attention from the viewpoint of parameterized…

Data Structures and Algorithms · Computer Science 2008-11-06 Henning Fernau , Fedor V. Fomin , Daniel Lokshtanov , Daniel Raible , Saket Saurabh , Yngve Villanger

In this paper, we study the weighted $k$-server problem on the uniform metric in both the offline and online settings. We start with the offline setting. In contrast to the (unweighted) $k$-server problem which has a polynomial-time…

Data Structures and Algorithms · Computer Science 2023-07-25 Anupam Gupta , Amit Kumar , Debmalya Panigrahi

For a given graph $G=(V,\, E)$ with a terminal set $S$ and a selected root $r\in S$, a positive integer cost and a delay on every edge and a delay constraint $D\in Z^{+}$, the shallow-light Steiner tree (\emph{SLST}) problem is to compute a…

Data Structures and Algorithms · Computer Science 2013-09-04 Longkun Guo , Kewen Liao
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