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High dimensional data analysis for exploration and discovery includes three fundamental tasks: dimensionality reduction, clustering, and visualization. When the three associated tasks are done separately, as is often the case thus far,…

Machine Learning · Computer Science 2020-12-02 Stan Z. Li , Lirong Wu , Zelin Zang

Structure-based drug design (SBDD) focuses on designing small-molecule ligands that bind to specific protein pockets. Computational methods are integral in modern SBDD workflows and often make use of virtual screening methods via docking or…

Machine Learning · Computer Science 2025-12-05 Ian Dunn , Liv Toft , Tyler Katz , Juhi Gupta , Riya Shah , Ramith Hettiarachchi , David R. Koes

Neural networks equipped with self-attention have parallelizable computation, light-weight structure, and the ability to capture both long-range and local dependencies. Further, their expressive power and performance can be boosted by using…

Computation and Language · Computer Science 2019-03-27 Tao Shen , Tianyi Zhou , Guodong Long , Jing Jiang , Chengqi Zhang

Accurate prediction of inter-residue contacts of a protein is important to calcu- lating its tertiary structure. Analysis of co-evolutionary events among residues has been proved effective to inferring inter-residue contacts. The Markov…

Biomolecules · Quantitative Biology 2018-09-05 Haicang Zhang , Qi Zhang , Fusong Ju , Jianwei Zhu , Shiwei Sun , Yujuan Gao , Ziwei Xie , Minghua Deng , Shiwei Sun , Wei-Mou Zheng , Dongbo Bu

Machine Reading Comprehension (MRC) with multiple-choice questions requires the machine to read given passage and select the correct answer among several candidates. In this paper, we propose a novel approach called Convolutional Spatial…

Computation and Language · Computer Science 2019-11-05 Zhipeng Chen , Yiming Cui , Wentao Ma , Shijin Wang , Guoping Hu

Surgical scene understanding and multi-tasking learning are crucial for image-guided robotic surgery. Training a real-time robotic system for the detection and segmentation of high-resolution images provides a challenging problem with the…

Computer Vision and Pattern Recognition · Computer Science 2020-10-19 Mobarakol Islam , Vibashan VS , Hongliang Ren

Cross-domain recommendation (CDR) aims to leverage the correlation of users' behaviors in both the source and target domains to improve the user preference modeling in the target domain. Conventional CDR methods typically explore the…

Information Retrieval · Computer Science 2023-06-09 Haokai Ma , Ruobing Xie , Lei Meng , Xin Chen , Xu Zhang , Leyu Lin , Jie Zhou

Label distribution learning (LDL) is a paradigm that each sample is associated with a label distribution. At present, the existing approaches are proposed for the single-view LDL problem with labeled data, while the multi-view LDL problem…

Machine Learning · Computer Science 2025-10-17 Yanshan Xiao , Kaihong Wu , Bo Liu

Many control tasks exhibit similar dynamics that can be modeled as having common latent structure. Hidden-Parameter Markov Decision Processes (HiP-MDPs) explicitly model this structure to improve sample efficiency in multi-task settings.…

Machine Learning · Computer Science 2021-02-15 Amy Zhang , Shagun Sodhani , Khimya Khetarpal , Joelle Pineau

Mamba has recently gained widespread attention as a backbone model for point cloud modeling, leveraging a state-space architecture that enables efficient global sequence modeling with linear complexity. However, its lack of local inductive…

Computer Vision and Pattern Recognition · Computer Science 2025-07-24 Xuanyu Lin , Xiaona Zeng , Xianwei Zheng , Xutao Li

Early detection of lung nodules is of great importance in lung cancer screening. Existing research recognizes the critical role played by CAD systems in early detection and diagnosis of lung nodules. However, many CAD systems, which are…

Computer Vision and Pattern Recognition · Computer Science 2018-10-18 Naji Khosravan , Ulas Bagci

The current reinforcement learning framework focuses exclusively on performance, often at the expense of efficiency. In contrast, biological control achieves remarkable performance while also optimizing computational energy expenditure and…

Artificial Intelligence · Computer Science 2024-11-01 Devdhar Patel , Terrence Sejnowski , Hava Siegelmann

Contrastive learning has gained significant attention in skeleton-based action recognition for its ability to learn robust representations from unlabeled data. However, existing methods rely on a single skeleton convention, which limits…

Computer Vision and Pattern Recognition · Computer Science 2025-08-21 Mert Kiray , Alvaro Ritter , Nassir Navab , Benjamin Busam

Detecting ships in synthetic aperture radar (SAR) images is challenging due to strong speckle noise, complex surroundings, and varying scales. This paper proposes MLDet, a multitask learning framework for SAR ship detection, consisting of…

Computer Vision and Pattern Recognition · Computer Science 2024-11-22 Ming Zhao , Xin Zhang , André Kaup

Multi-task learning (MTL) is a subfield of machine learning in which multiple tasks are simultaneously learned by a shared model. Such approaches offer advantages like improved data efficiency, reduced overfitting through shared…

Machine Learning · Computer Science 2020-09-22 Michael Crawshaw

Dense prediction tasks such as segmentation and detection of pathological entities hold crucial clinical value in computational pathology workflows. However, obtaining dense annotations on large cohorts is usually tedious and expensive.…

Computer Vision and Pattern Recognition · Computer Science 2023-03-24 Jingwei Zhang , Saarthak Kapse , Ke Ma , Prateek Prasanna , Maria Vakalopoulou , Joel Saltz , Dimitris Samaras

Pocket representations play a vital role in various biomedical applications, such as druggability estimation, ligand affinity prediction, and de novo drug design. While existing geometric features and pretrained representations have…

Machine Learning · Computer Science 2024-03-08 Bowen Gao , Yinjun Jia , Yuanle Mo , Yuyan Ni , Weiying Ma , Zhiming Ma , Yanyan Lan

Incorporating auxiliary information alongside primary data can significantly enhance the accuracy of simultaneous inference. However, existing multiple testing methods face challenges in efficiently incorporating complex side information,…

Methodology · Statistics 2025-02-11 Ziyi Liang , T. Tony Cai , Wenguang Sun , Yin Xia

Effective modeling of heterogeneous subpopulations presents a significant challenge due to variations in individual characteristics and behaviors. This paper proposes a novel approach to address this issue through multi-task learning (MTL)…

Machine Learning · Computer Science 2025-08-22 Elif Konyar , Mostafa Reisi Gahrooei , Kamran Paynabar

Self-supervised pretraining is promising for large-scale neuroimaging, yet the impact of region-aware masking and hybrid sequence modeling remains underexplored. In this work, we introduce Rhamba, a region-aware pretraining framework that…