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Abstract Self-similar, fractal nature of turbulence is discussed in the context of two dimensional turbulence, by considering the fractal structure of the wave-number domain using spirals. In loose analogy with phyllotaxis in plants, each…

Fluid Dynamics · Physics 2019-10-30 Ö. D. Gürcan , Shaokang Xu , P. Morel

ENDOR spectroscopy is an important tool to determine the complicated three-dimensional structure of biomolecules and in particular enables measurements of intramolecular distances. Usually, spectra are determined by averaging the data…

Statistics Theory · Mathematics 2023-07-25 Henrik Wiechers , Markus Zobel , Marina Bennati , Igor Tkach , Benjamin Eltzner , Stephan Huckemann , Yvo Pokern

We study the rational Kontsevich integral of torus knots. We construct explicitely a series of diagrams made of circles joined together in a tree-like fashion and colored by some special rational functions. We show that this series codes…

Geometric Topology · Mathematics 2014-10-01 Julien Marche

We introduce a coarse-grained rigid nucleotide model of DNA that reproduces the basic thermodynamics of short strands: duplex hybridization, single-stranded stacking and hairpin formation, and also captures the essential structural…

Soft Condensed Matter · Physics 2010-05-14 Thomas E. Ouldridge , Ard A. Louis , Jonathan P. K. Doye

Mechanical properties of nucleic acids play an important role in many biological processes which often involve physical deformations of these molecules. At sufficiently long length scales (say above $\sim 20-30$ base pairs) the mechanics of…

Statistical Mechanics · Physics 2022-08-12 Midas Segers , Aderik Voorspoels , Takahiro Sakaue , Enrico Carlon

We explore a model system consisting of a particle confined to move along a toroidal helix while being exposed to a static potential as well as a driving force due to a harmonically oscillating electric field. It is shown that in the limit…

Chaotic Dynamics · Physics 2022-05-18 J. F. Gloy , A. Siemens , P. Schmelcher

Using the Klein-Majda-Damodaran model of nearly-parallel vortex filaments, we construct vortex knots and links on a torus involving periodic boundary conditions and analyze their stability. For a special class of vortex knots -- toroidal…

Pattern Formation and Solitons · Physics 2019-12-13 Theodore Kolokolnikov , Christopher Ticknor , Panayotis Kevrekidis

Suspensions of hard core spherical particles of diameter $D$ with inter-core connectivity range $\delta$ can be described in terms of random geometric graphs, where nodes represent the sphere centers and edges are assigned to any two…

Disordered Systems and Neural Networks · Physics 2017-09-12 Claudio Grimaldi

We prove a flat torus theorem for quadric complexes. In particular, we show that if a non-cyclic free abelian group $G$ acts metrically properly on a quadric complex $X$, then $G \cong \mathbb{Z}^2$ and $X$ contains a $G$-invariant…

Group Theory · Mathematics 2026-05-22 Nima Hoda , Zachary Munro

We have investigated a periodically driven Creutz ladder in presence of two different driving protocols, namely, a sinusoidal drive and a $\delta$-kick imparted to the ladder at regular intervals of time. Specifically, we have studied the…

Mesoscale and Nanoscale Physics · Physics 2023-09-19 Koustav Roy , Saurabh Basu

Dynamical systems with polynomial right-hand sides are very important in various applications, e.g., in biochemistry and population dynamics. The mathematical study of these dynamical systems is challenging due to the possibility of…

Dynamical Systems · Mathematics 2026-01-16 Balázs Boros , Gheorghe Craciun , Oskar Henriksson , Jiaxin Jin , Diego Rojas La Luz

Global F-theory compactifications whose fibers are realized as complete intersections form a richer set of models than just hypersurfaces. The detailed study of the physics associated with such geometries depends crucially on being able to…

High Energy Physics - Theory · Physics 2015-01-29 Volker Braun , Thomas W. Grimm , Jan Keitel

Method of derivation of the duality relations for two-dimensional Z(N)-symmetric spin models on finite square lattice wrapped on the torus is proposed. As example, exact duality relations for the nonhomogeneous Ising model (N=2) and the…

High Energy Physics - Theory · Physics 2008-02-03 A. I. Bugrij , V. N. Shadura

The long-time behavior of solutions to different versions of Oseen equations of fluid flow on the 2D torus is analyzed using the concept of hypocoercivity. The considered models are isotropic Oseen equations where the viscosity acts…

Analysis of PDEs · Mathematics 2023-11-08 Franz Achleitner , Anton Arnold , Volker Mehrmann

The notion of topological order (TO) can be defined through the characteristic ground state degeneracy of a system placed on a manifold with non-zero genus $g$, such as a torus. This ground state degeneracy has served as a key tool for…

Superconductivity · Physics 2024-11-28 Tsz Fung Heung , Marcel Franz

The connection problem for isomonodromic tau functions on the one-punctured torus concerns the ratio between the tau function and its modular transform, associated to dual pants decompositions of the torus. In this paper, we study the…

Mathematical Physics · Physics 2025-08-20 Fabrizio Del Monte , Harini Desiraju , Pavlo Gavrylenko

In this paper, we study the discrete differential calculus on hypergraphs by using the Kouzul complexes. We define the constrained (co)homology for hypergraphs and give the corresponding Mayer-Vietoris sequences. We prove the functoriality…

Algebraic Topology · Mathematics 2023-10-24 Shiquan Ren

The base pair fluctuations and helix untwisting are examined for a circular molecule. A realistic mesoscopic model including twisting degrees of freedom and bending of the molecular axis is proposed. The computational method, based on path…

Biomolecules · Quantitative Biology 2013-05-30 Marco Zoli

A cycle double cover (CDC) of an undirected graph is a collection of the graph's cycles such that every edge of the graph belongs to exactly two cycles. We describe a constructive method for generating all the cubic graphs that have a 6-CDC…

Discrete Mathematics · Computer Science 2009-04-17 Rodrigo S. C. Leao , Valmir C. Barbosa

We define and study the Weil pairing on the moduli of twisted curves. If $X$ is a twisted curve, then we can combinatorially describe a certain subgroup and a quotient group of $\text{Pic}(X)[2]$ that are Weil dual. Moreover, the pairing…

Algebraic Geometry · Mathematics 2023-10-16 Ashwin Deopurkar