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Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing…

Computation and Language · Computer Science 2021-09-20 Yu Gu , Robert Tinn , Hao Cheng , Michael Lucas , Naoto Usuyama , Xiaodong Liu , Tristan Naumann , Jianfeng Gao , Hoifung Poon

The advancement of natural language processing (NLP) systems in healthcare hinges on language model ability to interpret the intricate information contained within clinical notes. This process often requires integrating information from…

Computation and Language · Computer Science 2024-03-12 Zhichao Yang , Avijit Mitra , Sunjae Kwon , Hong Yu

Background Clinical studies using real-world data may benefit from exploiting clinical reports, a particularly rich albeit unstructured medium. To that end, natural language processing can extract relevant information. Methods based on…

Computation and Language · Computer Science 2022-07-27 Basile Dura , Charline Jean , Xavier Tannier , Alice Calliger , Romain Bey , Antoine Neuraz , Rémi Flicoteaux

In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even…

Computation and Language · Computer Science 2024-12-16 Saptarshi Sengupta , Connor Heaton , Suhan Cui , Soumalya Sarkar , Prasenjit Mitra

The Spanish language is one of the top 5 spoken languages in the world. Nevertheless, finding resources to train or evaluate Spanish language models is not an easy task. In this paper we help bridge this gap by presenting a BERT-based…

Computation and Language · Computer Science 2023-08-08 José Cañete , Gabriel Chaperon , Rodrigo Fuentes , Jou-Hui Ho , Hojin Kang , Jorge Pérez

Code-switching, or alternating between languages within a single conversation, presents challenges for multilingual language models on NLP tasks. This research investigates if pre-training Multilingual BERT (mBERT) on code-switched datasets…

Computation and Language · Computer Science 2025-03-12 Katherine Xie , Nitya Babbar , Vicky Chen , Yoanna Turura

The introduction of Large Language Models (LLMs), and the vast volume of publicly available medical data, amplified the application of NLP to the medical domain. However, LLMs are pretrained on data that are not explicitly relevant to the…

Computation and Language · Computer Science 2023-12-12 Chris Solomou

The overwhelming amount of biomedical scientific texts calls for the development of effective language models able to tackle a wide range of biomedical natural language processing (NLP) tasks. The most recent dominant approaches are…

Computation and Language · Computer Science 2021-04-21 Giacomo Miolo , Giulio Mantoan , Carlotta Orsenigo

Electronic health records (EHR) contain narrative notes that provide extensive details on the medical condition and management of patients. Natural language processing (NLP) of clinical notes can use observed frequencies of clinical terms…

Computation and Language · Computer Science 2023-07-04 Bryan Cai , Sihang Zeng , Yucong Lin , Zheng Yuan , Doudou Zhou , Lu Tian

BERT-based models are currently used for solving nearly all Natural Language Processing (NLP) tasks and most often achieve state-of-the-art results. Therefore, the NLP community conducts extensive research on understanding these models, but…

Computation and Language · Computer Science 2021-05-06 Robert Mroczkowski , Piotr Rybak , Alina Wróblewska , Ireneusz Gawlik

Pre-trained transformers are now the de facto models in Natural Language Processing given their state-of-the-art results in many tasks and languages. However, most of the current models have been trained on languages for which large text…

Computation and Language · Computer Science 2022-12-13 Amine Abdaoui , Mohamed Berrimi , Mourad Oussalah , Abdelouahab Moussaoui

With the growing amount of text in health data, there have been rapid advances in large pre-trained models that can be applied to a wide variety of biomedical tasks with minimal task-specific modifications. Emphasizing the cost of these…

The Arabic language is a morphologically rich language with relatively few resources and a less explored syntax compared to English. Given these limitations, Arabic Natural Language Processing (NLP) tasks like Sentiment Analysis (SA), Named…

Computation and Language · Computer Science 2021-03-09 Wissam Antoun , Fady Baly , Hazem Hajj

Background: In the information extraction and natural language processing domain, accessible datasets are crucial to reproduce and compare results. Publicly available implementations and tools can serve as benchmark and facilitate the…

In this study, we generate and maintain a database of 10 million virtual lipids through METiS's in-house de novo lipid generation algorithms and lipid virtual screening techniques. These virtual lipids serve as a corpus for pre-training,…

Computation and Language · Computer Science 2025-05-06 Tianhao Yu , Cai Yao , Zhuorui Sun , Feng Shi , Lin Zhang , Kangjie Lyu , Xuan Bai , Andong Liu , Xicheng Zhang , Jiali Zou , Wenshou Wang , Chris Lai , Kai Wang

Pre-training large-scale neural language models on raw texts has made a significant contribution to improving transfer learning in natural language processing (NLP). With the introduction of transformer-based language models, such as…

Computation and Language · Computer Science 2024-05-08 Shoya Wada , Toshihiro Takeda , Shiro Manabe , Shozo Konishi , Jun Kamohara , Yasushi Matsumura

Contextual word embedding models such as ELMo (Peters et al., 2018) and BERT (Devlin et al., 2018) have dramatically improved performance for many natural language processing (NLP) tasks in recent months. However, these models have been…

Computation and Language · Computer Science 2019-06-24 Emily Alsentzer , John R. Murphy , Willie Boag , Wei-Hung Weng , Di Jin , Tristan Naumann , Matthew B. A. McDermott

The use of large pretrained neural networks to create contextualized word embeddings has drastically improved performance on several natural language processing (NLP) tasks. These computationally expensive models have begun to be applied to…

Computers and Society · Computer Science 2019-12-03 Benjamin Clavié , Kobi Gal

Infectious diseases are a significant public health concern globally, and extracting relevant information from scientific literature can facilitate the development of effective prevention and treatment strategies. However, the large amount…

Computation and Language · Computer Science 2023-03-24 Shaina Raza , Syed Raza Bashir

Natural language processing (NLP) has made significant progress for well-resourced languages such as English but lagged behind for low-resource languages like Setswana. This paper addresses this gap by presenting PuoBERTa, a customised…

Computation and Language · Computer Science 2023-10-25 Vukosi Marivate , Moseli Mots'Oehli , Valencia Wagner , Richard Lastrucci , Isheanesu Dzingirai