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The identification of drug-target binding affinity (DTA) has attracted increasing attention in the drug discovery process due to the more specific interpretation than binary interaction prediction. Recently, numerous deep learning-based…

Machine Learning · Computer Science 2022-03-23 Zhaoyang Chu , Shichao Liu , Wen Zhang

Graph Neural Networks have rapidly advanced in materials science and chemistry,with their performance critically dependent on comprehensive representations of crystal or molecular structures across five dimensions: elemental information,…

Materials Science · Physics 2025-09-09 Hongwei Du , Hong Wang

Logistics optimization nowadays is becoming one of the hottest areas in the AI community. In the past year, significant advancements in the domain were achieved by representing the problem in a form of graph. Another promising area of…

Machine Learning · Computer Science 2022-05-26 Zangir Iklassov , Dmitrii Medvedev

The large number of possible structures of metal-organic frameworks (MOFs) and their limitless potential applications has motivated molecular modelers and researchers to develop methods and models to efficiently assess MOF performance. Some…

Materials Science · Physics 2021-10-04 Krishnendu Mukherjee , Alexander W. Dowling , Yamil Colón

The ever-increasing complexity and operational diversity of modern Neural Networks (NNs) have caused the need for low-power and, at the same time, high-performance edge devices for AI applications. Coarse Grained Reconfigurable…

An increasing number of researchers are finding use for nth-order gradient computations for a wide variety of applications, including graphics, meta-learning (MAML), scientific computing, and most recently, implicit neural representations…

Hardware Architecture · Computer Science 2025-10-27 Stefan Abi-Karam , Rishov Sarkar , Dejia Xu , Zhiwen Fan , Zhangyang Wang , Cong Hao

In this paper, we propose a novel data-driven regression model for aerosol optical depth (AOD) retrieval. First, we adopt a low rank representation (LRR) model to learn a powerful representation of the spectral response. Then, graph…

Machine Learning · Computer Science 2016-11-23 Yubao Sun , Renlong Hang , Qingshan Liu , Fuping Zhu , Hucheng Pei

Designing molecules with specific properties is a long-lasting research problem and is central to advancing crucial domains such as drug discovery and material science. Recent advances in deep graph generative models treat molecule design…

Machine Learning · Computer Science 2022-03-02 Yuanqi Du , Xiaojie Guo , Amarda Shehu , Liang Zhao

Recent advances in graph learning have paved the way for innovative retrieval-augmented generation (RAG) systems that leverage the inherent relational structures in graph data. However, many existing approaches suffer from rigid, fixed…

Information Retrieval · Computer Science 2025-03-26 Yuan Li , Jun Hu , Jiaxin Jiang , Zemin Liu , Bryan Hooi , Bingsheng He

In an effort to develop a rapid, reliable, and cost-effective method for predicting the structure of single-phase high entropy alloys, a Graph Neural Network (ALIGNN-FF) based approach was introduced. This method was successfully tested on…

Text-attributed graphs are widely used across domains, offering rich opportunities for zero-shot learning via graph-text alignment. However, existing methods struggle with tasks requiring fine-grained pattern recognition, particularly on…

Machine Learning · Computer Science 2025-10-15 Heng Zhang , Tianyi Zhang , Zijun Liu , Yuling Shi , Yaomin Shen , Haochen You , Haichuan Hu , Lubin Gan , Jin Huang

Recent years have witnessed an upsurge in research interests and applications of machine learning on graphs. However, manually designing the optimal machine learning algorithms for different graph datasets and tasks is inflexible,…

Graph Representation Learning (GRL) has experienced significant progress as a means to extract structural information in a meaningful way for subsequent learning tasks. Current approaches including shallow embeddings and Graph Neural…

Machine Learning · Computer Science 2020-06-19 Antonia Gogoglou , C. Bayan Bruss , Brian Nguyen , Reza Sarshogh , Keegan E. Hines

The success of machine learning (ML) in materials property prediction depends heavily on how the materials are represented for learning. Two dominant families of material descriptors exist, one that encodes crystal structure in the…

Machine Learning · Computer Science 2022-04-05 Achintha Ihalage , Yang Hao

Graphical models are powerful tools to investigate complex dependency structures in high-throughput datasets. However, most existing graphical models make one of the two canonical assumptions: (i) a homogeneous graph with a common network…

Methodology · Statistics 2023-10-31 Tsung-Hung Yao , Yang Ni , Anindya Bhadra , Jian Kang , Veerabhadran Baladandayuthapani

This paper presents a novel approach for predicting Power Conversion Efficiency (PCE) of Organic Photovoltaic (OPV) devices, called GLaD: synergizing molecular Graphs and Language Descriptors for enhanced PCE prediction. Due to the lack of…

Machine Learning · Computer Science 2024-05-24 Thao Nguyen , Tiara Torres-Flores , Changhyun Hwang , Carl Edwards , Ying Diao , Heng Ji

Successful material selection is critical in designing and manufacturing products for design automation. Designers leverage their knowledge and experience to create high-quality designs by selecting the most appropriate materials through…

Accurate phase equilibria are foundational to alloy design because they encode the underlying thermodynamics governing stability, transformations, and processing windows. However, while the CALculation of Phase Diagrams (CALPHAD) provides a…

Machine Learning · Computer Science 2026-04-21 Eunjeong Park , Amrita Basak

Graph Retrieval-Augmented Generation (GRAG or Graph RAG) architectures aim to enhance language understanding and generation by leveraging external knowledge. However, effectively capturing and integrating the rich semantic information…

Computation and Language · Computer Science 2025-01-29 Karishma Thakrar

In recent years, molecular graph representation learning (GRL) has drawn much more attention in molecular property prediction (MPP) problems. The existing graph methods have demonstrated that 3D geometric information is significant for…

Machine Learning · Computer Science 2022-12-01 Hao Zhang , Nan Zhang , Ruixin Zhang , Lei Shen , Yingyi Zhang , Meng Liu
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