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Pretraining DNA language models (DNALMs) on the full human genome is resource-intensive, yet often considered necessary for strong downstream performance. Inspired by recent findings in NLP and long-context modeling, we explore an…

Genomics · Quantitative Biology 2025-06-24 Sohan Mupparapu , Parameswari Krishnamurthy , Ratish Puduppully

Studies show that developers' answers to the mobile app users' feedbacks on app stores can increase the apps' star rating. To help app developers generate answers that are related to the users' issues, recent studies develop models to…

Computation and Language · Computer Science 2022-02-07 Yue Cao , Fatemeh H. Fard

Embedders play a central role in machine learning, projecting any object into numerical representations that can, in turn, be leveraged to perform various downstream tasks. The evaluation of embedding models typically depends on…

Machine Learning · Computer Science 2024-11-19 Maxime Darrin , Philippe Formont , Ismail Ben Ayed , Jackie CK Cheung , Pablo Piantanida

Vulnerability detection is garnering increasing attention in software engineering, since code vulnerabilities possibly pose significant security. Recently, reusing various code pre-trained models has become common for code embedding without…

Software Engineering · Computer Science 2024-08-12 Yu Zhao , Lina Gong , Zhiqiu Huang , Yongwei Wang , Mingqiang Wei , Fei Wu

The task of ranking individuals or teams, based on a set of comparisons between pairs, arises in various contexts, including sporting competitions and the analysis of dominance hierarchies among animals and humans. Given data on which…

Machine Learning · Statistics 2022-10-21 M. E. J. Newman

Particularly in low-data regimes, an outstanding challenge in machine learning is developing principled techniques for augmenting our models with suitable priors. This is to encourage them to learn in ways that are compatible with our…

Machine Learning · Computer Science 2022-10-25 Kristy Choi , Chris Cundy , Sanjari Srivastava , Stefano Ermon

Often the development of novel functional peptides is not amenable to high throughput or purely computational screening methods. Peptides must be synthesized one at a time in a process that does not generate large amounts of data. One way…

Biomolecules · Quantitative Biology 2020-12-14 Rainier Barrett , Andrew D. White

The problem of predicting the training time of machine learning (ML) models has become extremely relevant in the scientific community. Being able to predict a priori the training time of an ML model would enable the automatic selection of…

Machine Learning · Computer Science 2023-09-21 Francesca Marzi , Giordano d'Aloisio , Antinisca Di Marco , Giovanni Stilo

Tabular classification has traditionally relied on supervised algorithms, which estimate the parameters of a prediction model using its training data. Recently, Prior-Data Fitted Networks (PFNs) such as TabPFN have successfully learned to…

Machine Learning · Computer Science 2023-11-20 Benjamin Feuer , Chinmay Hegde , Niv Cohen

Existing language model benchmarks provide contradictory model rankings, even for benchmarks that aim to capture similar skills. This dilemma of conflicting rankings hampers model selection, clouds model comparisons, and adds confusion to a…

Machine Learning · Computer Science 2025-10-14 Guanhua Zhang , Ricardo Dominguez-Olmedo , Moritz Hardt

A salient characteristic of pre-trained language models (PTLMs) is a remarkable improvement in their generalization capability and emergence of new capabilities with increasing model capacity and pre-training dataset size. Consequently, we…

With the urgent demand for generalized deep models, many pre-trained big models are proposed, such as BERT, ViT, GPT, etc. Inspired by the success of these models in single domains (like computer vision and natural language processing), the…

Computer Vision and Pattern Recognition · Computer Science 2024-04-11 Xiao Wang , Guangyao Chen , Guangwu Qian , Pengcheng Gao , Xiao-Yong Wei , Yaowei Wang , Yonghong Tian , Wen Gao

We develop task scaling laws and model ladders to predict the individual task performance of pretrained language models (LMs) in the overtrained setting. Standard power laws for language modeling loss cannot accurately model task…

Simile interpretation is a crucial task in natural language processing. Nowadays, pre-trained language models (PLMs) have achieved state-of-the-art performance on many tasks. However, it remains under-explored whether PLMs can interpret…

Computation and Language · Computer Science 2022-03-17 Qianyu He , Sijie Cheng , Zhixu Li , Rui Xie , Yanghua Xiao

Selecting an appropriate pre-trained source model is a critical, yet computationally expensive, task in transfer learning. Model Transferability Estimation (MTE) methods address this by providing efficient proxy metrics to rank models…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Yuhang Liu , Wenjie Zhao , Yunhui Guo

Model selection is a strategy aimed at creating accurate and robust models. A key challenge in designing these algorithms is identifying the optimal model for classifying any particular input sample. This paper addresses this challenge and…

Machine Learning · Computer Science 2023-05-22 James Kotary , Vincenzo Di Vito , Ferdinando Fioretto

In large-scale ranking systems, cascading architectures have been widely adopted to achieve a balance between efficiency and effectiveness. The pre-ranking module plays a vital role in selecting a subset of candidates for the subsequent…

Information Retrieval · Computer Science 2024-07-18 YaChen Yan , Liubo Li

This paper argues that continual learning methods can benefit by splitting the capacity of the learner across multiple models. We use statistical learning theory and experimental analysis to show how multiple tasks can interact with each…

Machine Learning · Computer Science 2024-05-07 Rahul Ramesh , Pratik Chaudhari

To cope with the accelerating pace of technological changes, talents are urged to add and refresh their skills for staying in active and gainful employment. This raises a natural question: what are the right skills to learn? Indeed, it is a…

Computers and Society · Computer Science 2017-12-11 Tong Xu , Hengshu Zhu , Chen Zhu , Pan Li , Hui Xiong

Pre-trained protein models (PTPMs) represent a protein with one fixed embedding and thus are not capable for diverse tasks. For example, protein structures can shift, namely protein folding, between several conformations in various…

Artificial Intelligence · Computer Science 2022-02-08 Qiang Zhang , Zeyuan Wang , Yuqiang Han , Haoran Yu , Xurui Jin , Huajun Chen