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In this paper, we study the problem of graph similarity search with graph edit distance (GED) constraints. Due to the NP-hardness of GED computation, existing solutions to this problem adopt the filtering-and-verification framework with a…

Databases · Computer Science 2020-04-03 Jongik Kim

Let $G=(V,E)$ be a connected graph. A vertex $w\in V$ distinguishes two elements (vertices or edges) $x,y\in E\cup V$ if $d_G(w,x)\ne d_G(w,y)$. A set $S$ of vertices in a connected graph $G$ is a mixed metric generator for $G$ if every two…

Combinatorics · Mathematics 2016-11-28 Aleksander Kelenc , Dorota Kuziak , Andrej Taranenko , Ismael G. Yero

The Fr\'{e}chet distance is a well-studied similarity measure between curves that is widely used throughout computer science. Motivated by applications where curves stem from paths and walks on an underlying graph (such as a road network),…

Computational Geometry · Computer Science 2024-11-20 Anne Driemel , Ivor van der Hoog , Eva Rotenberg

The problem of measuring similarity of graphs and their nodes is important in a range of practical problems. There is a number of proposed measures, some of them being based on iterative calculation of similarity between two graphs and the…

Artificial Intelligence · Computer Science 2010-09-28 Mladen Nikolic

This paper proposes a family of graph metrics for measuring distances between graphs of different sizes. The proposed metric family defines a general form of the graph generalised optimal sub-pattern assignment (GOSPA) metric and is also…

Social and Information Networks · Computer Science 2025-06-24 Jinhao Gu , Ángel F. García-Fernández , Robert E. Firth , Lennart Svensson

We show that for various classes C of sparse graphs, and several measures of distance to such classes (such as edit distance and elimination distance), the problem of determining the distance of a given graph G to C is fixed-parameter…

Data Structures and Algorithms · Computer Science 2015-02-23 Jannis Bulian , Anuj Dawar

Given a graph $G$, a subgraph $H$ is isometric if $d_H(u,v) = d_G(u,v)$ for every pair $u,v\in V(H)$, where $d$ is the distance function. A graph $G$ is distance preserving (dp) if it has an isometric subgraph of every possible order. A…

Discrete Mathematics · Computer Science 2018-05-28 Emad Zahedi , Jason P. Smith

The need to identify graphs with small structural distances from a query arises in domains such as biology, chemistry, recommender systems, and social network analysis. Among several methods for measuring inter-graph distance, Graph Edit…

Machine Learning · Computer Science 2025-09-30 Aditya Bommakanti , Harshith Reddy Vonteri , Sayan Ranu , Panagiotis Karras

Simplifying graphs is a very applicable problem in numerous domains, especially in computational geometry. Given a geometric graph and a threshold, the minimum-complexity graph simplification asks for computing an alternative graph of…

Computational Geometry · Computer Science 2021-11-05 Omrit Filtser , Majid Mirzanezhad , Carola Wenk

Lipman et al. [ACM Transactions on Graphics 29 (3) (2010), 1--11] introduced the concept of biharmonic distance to measure the distances between pairs of points on a 3D surface. Biharmonic distance has some advantages over resistance…

Combinatorics · Mathematics 2022-09-08 Yulong Wei , Rong-hua Li , Weihua Yang

Distance measures play an important role in shape classification and data analysis problems. Topological distances based on Reeb graphs and persistence diagrams have been employed to obtain effective algorithms in shape matching and scalar…

Machine Learning · Computer Science 2023-03-07 Yashwanth Ramamurthi , Amit Chattopadhyay

Proximity graph-based methods have emerged as a leading paradigm for approximate nearest neighbor (ANN) search in the system community. This paper presents fresh insights into the theoretical foundation of these methods. We describe an…

Data Structures and Algorithms · Computer Science 2025-09-10 Shangqi Lu , Yufei Tao

Graph neural networks (GNNs) enable the analysis of graphs using deep learning, with promising results in capturing structured information in graphs. This paper focuses on creating a small graph to represent the original graph, so that GNNs…

Machine Learning · Computer Science 2022-06-29 Mengyang Liu , Shanchuan Li , Xinshi Chen , Le Song

Persistence diagrams (PD)s play a central role in topological data analysis. This analysis requires computing distances among such diagrams such as the $1$-Wasserstein distance. Accurate computation of these PD distances for large data sets…

Computational Geometry · Computer Science 2025-05-13 Tamal K. Dey , Simon Zhang

The average distance of a vertex $v$ of a connected graph $G$ is the arithmetic mean of the distances from $v$ to all other vertices of $G$. The proximity $\pi(G)$ and the remoteness $\rho(G)$ of $G$ are the minimum and the maximum of the…

Combinatorics · Mathematics 2023-06-22 Peter Dankelmann , Sonwabile Mafunda , Sufiyan Mallu

Consider a finite directed graph without cycles in which the arrows are weighted. We present an algorithm for the computation of a new distance, called path-length-weighted distance, which has proven useful for graph analysis in the context…

Data Structures and Algorithms · Computer Science 2024-11-05 R. Arnau , J. M. Calabuig , L. M. García Raffi , E. A. Sánchez Pérez , S. Sanjuan

Graph Drawing techniques have been developed in the last few years with the purpose of producing aesthetically pleasing node-link layouts. Recently, the employment of differentiable loss functions has paved the road to the massive usage of…

Machine Learning · Computer Science 2022-07-04 Matteo Tiezzi , Gabriele Ciravegna , Marco Gori

Similarity distance measure between two trajectories is an essential tool to understand patterns in motion, for example, in Human-Robot Interaction or Imitation Learning. The problem has been faced in many fields, from Signal Processing,…

Human-Computer Interaction · Computer Science 2019-07-08 Julen Urain , Jan Peters

Graph Neural Networks (GNNs) have shown remarkable success in learning from graph-structured data. However, their application to directed graphs (digraphs) presents unique challenges, primarily due to the inherent asymmetry in node…

Machine Learning · Computer Science 2025-05-16 Wei Zhuo , Han Yu , Guang Tan , Xiaoxiao Li

Let $G_n$ be a random geometric graph with vertex set $[n]$ based on $n$ i.i.d.\ random vectors $X_1,\ldots,X_n$ drawn from an unknown density $f$ on $\R^d$. An edge $(i,j)$ is present when $\|X_i -X_j\| \le r_n$, for a given threshold…

Machine Learning · Statistics 2023-11-23 Caelan Atamanchuk , Luc Devroye , Gabor Lugosi