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Related papers: Drug Repurposing Targeting COVID-19 3CL Protease u…

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Drug repositioning (DR) refers to identification of novel indications for the approved drugs. The requirement of huge investment of time as well as money and risk of failure in clinical trials have led to surge in interest in drug…

Computation and Language · Computer Science 2017-05-23 Sahil Manchanda , Ashish Anand

The discovery of novel inhibitor molecules for emerging drug-target proteins is widely acknowledged as a challenging inverse design problem: Exhaustive exploration of the vast chemical search space is impractical, especially when the target…

COVID-19 has affected the world tremendously. It is critical that biological experiments and clinical designs are informed by computational approaches for time- and cost-effective solutions. Comparative analyses particularly can play a key…

Biomolecules · Quantitative Biology 2020-04-10 Goksel Misirli

With worldwide concerns surrounding the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), there is a rapidly growing body of literature on the virus. Clinicians, researchers, and policy-makers need a way to effectively search…

Information Retrieval · Computer Science 2020-08-04 Sean MacAvaney , Arman Cohan , Nazli Goharian

The rapid finding of effective therapeutics requires the efficient use of available resources in clinical trials. The use of covariate adjustment can yield statistical estimates with improved precision, resulting in a reduction in the…

Methodology · Statistics 2021-09-10 Nicholas Williams , Michael Rosenblum , Iván Díaz

There is an urgent need for automated methods to assist accurate and effective assessment of COVID-19. Radiology and nucleic acid test (NAT) are complementary COVID-19 diagnosis methods. In this paper, we present an end-to-end multitask…

Image and Video Processing · Electrical Eng. & Systems 2021-12-14 Guoqing Bao , Huai Chen , Tongliang Liu , Guanzhong Gong , Yong Yin , Lisheng Wang , Xiuying Wang

Drug repurposing identifies new therapeutic uses for existing drugs, reducing the time and costs compared to traditional de novo drug discovery. Most existing drug repurposing studies using real-world patient data often treat the entire…

Machine Learning · Computer Science 2024-12-31 Seungyeon Lee , Ruoqi Liu , Feixiong Cheng , Ping Zhang

Machine learning shows great potential in virtual screening for drug discovery. Current efforts on accelerating docking-based virtual screening do not consider using existing data of other previously developed targets. To make use of the…

Machine Learning · Computer Science 2021-12-14 Zijing Liu , Xianbin Ye , Xiaomin Fang , Fan Wang , Hua Wu , Haifeng Wang

Virtual screening of phytochemicals was performed through molecular docking, simulation, in silico ADMET and drug-likeness prediction to identify the potential hits that can inhibit the effects of SARS-CoV-2. Considering the published…

Biomolecules · Quantitative Biology 2020-07-30 Seshu Vardhan , Suban K Sahoo

The COVID-19 pandemic has spread globally for several months. Because its transmissibility and high pathogenicity seriously threaten people's lives, it is crucial to accurately and quickly detect COVID-19 infection. Many recent studies have…

Image and Video Processing · Electrical Eng. & Systems 2021-02-15 Xin He , Shihao Wang , Xiaowen Chu , Shaohuai Shi , Jiangping Tang , Xin Liu , Chenggang Yan , Jiyong Zhang , Guiguang Ding

Computer-aided diagnosis tools have experienced rapid growth and development in recent years. Among all, deep learning is the most sophisticated and popular tool. In this paper, researchers propose a novel deep learning model and apply it…

Computer Vision and Pattern Recognition · Computer Science 2022-05-03 Mundher Mohammed Taresh , Ningbo Zhu , Talal Ahmed Ali Ali , Mohammed Alghaili , Weihua Guo

With the goal of designing novel inhibitors for SARS-CoV-1 and SARS-CoV-2, we propose the general molecule optimization framework, Molecular Neural Assay Search (MONAS), consisting of three components: a property predictor which identifies…

Machine Learning · Computer Science 2021-02-01 Timothy Atkinson , Saeed Saremi , Faustino Gomez , Jonathan Masci

The COVID-19 pandemic has had adverse effects on both physical and mental health. During this pandemic, numerous studies have focused on gaining insights into health-related perspectives from social media. In this study, our primary…

Machine Learning · Computer Science 2024-12-02 Mahathir Mohammad Bishal , Md. Rakibul Hassan Chowdory , Anik Das , Muhammad Ashad Kabir

Purpose: Early detection and diagnosis of Covid-19 and accurate separation of patients with non-Covid-19 cases at the lowest cost and in the early stages of the disease are one of the main challenges in the epidemic of Covid-19. Concerning…

Image and Video Processing · Electrical Eng. & Systems 2020-12-22 Mustafa Ghaderzadeh , Farkhondeh Asadi

Single-cell and single-nucleus RNA sequencing (scRNA-seq /snRNA-seq) are widely used to reveal heterogeneity in cells, showing a growing potential for precision and personalized medicine. Nonetheless, sustainable drug discovery must be…

Molecular Networks · Quantitative Biology 2025-10-01 Sean Cottrell , Seungmin Yoon , Xiaoqi Wei , Alex Dickson , Guo-Wei Wei

The race to meet the challenges of the global pandemic has served as a reminder that the existing drug discovery process is expensive, inefficient and slow. There is a major bottleneck screening the vast number of potential small molecules…

The COVID-19 pandemic triggered by SARS-CoV-2 is a worldwide health disaster. Main protease is an attractive drug target among coronaviruses, due to its vital role in processing the polyproteins that are translated from the viral RNA. There…

Biomolecules · Quantitative Biology 2020-04-29 Estari Mamidala , Rakesh Davella , Swapna Gurrapu , Pujala Shivakrishna

In recent years, machine learning has been proposed as a promising strategy to build accurate scoring functions for computational docking finalized to numerically empowered drug discovery. However, the latest studies have suggested that…

Quantitative Methods · Quantitative Biology 2023-02-17 F. Pellicani , D. Dal Ben , A. Perali , S. Pilati

The development of therapeutic targets for COVID-19 treatment is based on the understanding of the molecular mechanism of pathogenesis. The identification of genes and proteins involved in the infection mechanism is the key to shed out…

Biomolecules · Quantitative Biology 2021-05-19 Jayanta Kumar Das , Swarup Roy , Pietro Hiram Guzzi

Machine learning (ML) in the representation of molecular-orbital-based (MOB) features has been shown to be an accurate and transferable approach to the prediction of post-Hartree-Fock correlation energies. Previous applications of MOB-ML…

Chemical Physics · Physics 2023-03-28 Lixue Cheng , Nikola B. Kovachki , Matthew Welborn , Thomas F. Miller