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Related papers: Drug Repurposing Targeting COVID-19 3CL Protease u…

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We examine a pair of graph generative models for the therapeutic design of novel drug candidates targeting SARS-CoV-2 viral proteins. Due to a sense of urgency, we chose well-validated models with unique strengths: an autoencoder that…

Biomolecules · Quantitative Biology 2021-05-24 Jenna Bilbrey , Logan Ward , Sutanay Choudhury , Neeraj Kumar , Ganesh Sivaraman

The virus SARS-CoV-2 has created a situation of global emergency all over the world from the last few months. We are witnessing a helpless situation due to COVID-19 as no vaccine or drug is effective against the disease. In the present…

Biological Physics · Physics 2020-12-02 Pooja , Papia Chowdhury

The COVID-19 pandemic triggered a wave of novel scientific literature that is impossible to inspect and study in a reasonable time frame manually. Current machine learning methods offer to project such body of literature into the vector…

Information Retrieval · Computer Science 2021-10-19 Blaž Škrlj , Marko Jukič , Nika Eržen , Senja Pollak , Nada Lavrač

The significance of efficient and accurate diagnosis amidst the unique challenges posed by the COVID-19 pandemic underscores the urgency for innovative approaches. In response to these challenges, we propose a transfer learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-12-12 Kenan Morani , Esra Kaya Ayana , Devrim Unay

SARS-CoV2, which causes coronavirus disease (COVID-19) is continuing to spread globally and has become a pandemic. People have lost their lives due to the virus and the lack of counter measures in place. Given the increasing caseload and…

Drug repurposing can accelerate the identification of effective compounds for clinical use against SARS-CoV-2, with the advantage of pre-existing clinical safety data and an established supply chain. RNA viruses such as SARS-CoV-2…

We report the results of our study of approved drugs as potential treatments for COVID 19, based on the application of various bioinformatics predictive methods. The drugs studied include chloroquine, ivermectin, remdesivir, sofosbuvir,…

Biomolecules · Quantitative Biology 2020-08-11 Ognjen Perišić

The pharmaceutical Research and development (R&D) process is lengthy and costly, taking nearly a decade to bring a new drug to the market. However, advancements in biotechnology, computational methods, and machine learning algorithms have…

Biomolecules · Quantitative Biology 2024-01-24 Damilola Oshunyinka

Because of the rapid spread of COVID-19 to almost every part of the globe, huge volumes of data and case studies have been made available, providing researchers with a unique opportunity to find trends and make discoveries like never…

Machine Learning · Computer Science 2021-10-20 Sarwan Ali , Yijing Zhou , Murray Patterson

Identifying protein targets for small molecules, or reverse screening, is essential for understanding drug action, guiding compound repurposing, predicting off-target effects, and elucidating the molecular mechanisms of bioactive compounds.…

Biomolecules · Quantitative Biology 2026-01-21 Shengjie Xu , Xianbin Ye , Mengran Zhu , Xiaonan Zhang , Shanzhuo Zhang , Xiaomin Fang

The accurate prediction of B-cell epitopes is critical for guiding vaccine development against infectious diseases, including SARS and COVID-19. This study explores the use of a deep neural network (DNN) model to predict B-cell epitopes for…

Machine Learning · Computer Science 2024-12-03 Xinyu Shi , Yixin Tao , Shih-Chi Lin

The steep climbing of victims caused by the new coronavirus disease 2019 (COVID-19) throughout the planet is sparking an unprecedented effort to identify effective therapeutic regimens to tackle the pandemic. The SARS-CoV-2 virus is known…

Therapeutic antibody development has become an increasingly popular approach for drug development. To date, antibody therapeutics are largely developed using large scale experimental screens of antibody libraries containing hundreds of…

Quantitative Methods · Quantitative Biology 2022-10-07 Lin Li , Esther Gupta , John Spaeth , Leslie Shing , Tristan Bepler , Rajmonda Sulo Caceres

The Reverse Transcription Polymerase Chain Reaction (RTPCR)} test is the silver bullet diagnostic test to discern COVID infection. Rapid antigen detection is a screening test to identify COVID positive patients in little as 15 minutes, but…

Machine Learning · Computer Science 2023-05-10 Md. Mohsin Sarker Raihan , Md. Mohi Uddin Khan , Laboni Akter , Abdullah Bin Shams

Introduction: For COVID-19 patients accurate prediction of disease severity and mortality risk would greatly improve care delivery and resource allocation. There are many patient-related factors, such as pre-existing comorbidities that…

Deep neural networks have increasingly been used as an auxiliary tool in healthcare applications, due to their ability to improve performance of several diagnosis tasks. However, these methods are not widely adopted in clinical settings due…

Machine Learning · Computer Science 2021-12-24 Ella Y. Wang , Anirudh Som , Ankita Shukla , Hongjun Choi , Pavan Turaga

This technical report proposes the use of a deep convolutional neural network as a preliminary diagnostic method in the analysis of chest computed tomography images from patients with symptoms of Severe Acute Respiratory Syndrome (SARS) and…

Image and Video Processing · Electrical Eng. & Systems 2022-08-24 Victor Felipe Reis-Silva

COVID-19 is currently one the most life-threatening problems around the world. The fast and accurate detection of the COVID-19 infection is essential to identify, take better decisions and ensure treatment for the patients which will help…

Image and Video Processing · Electrical Eng. & Systems 2020-04-21 Md Zahangir Alom , M M Shaifur Rahman , Mst Shamima Nasrin , Tarek M. Taha , Vijayan K. Asari

Efficiently steering generative models toward pharmacologically relevant regions of chemical space remains a major obstacle in molecular drug discovery under low-data regimes. We present VECTOR+: Valid-property-Enhanced Contrastive Learning…

Machine Learning · Computer Science 2025-09-03 Amartya Banerjee , Somnath Kar , Anirban Pal , Debabrata Maiti

Due to the limited availability and high cost of the reverse transcription-polymerase chain reaction (RT-PCR) test, many studies have proposed machine learning techniques for detecting COVID-19 from medical imaging. The purpose of this…

Computer Vision and Pattern Recognition · Computer Science 2021-08-11 Aishwarza Panday , Muhammad Ashad Kabir , Nihad Karim Chowdhury