Related papers: Bijective enumeration of general stacks
Combinatorics of biopolymer structures, especially enumeration of various RNA secondary structures and protein contact maps, is of significant interest for communities of both combinatorics and computational biology. However, most of the…
The contact map of a protein fold is a graph that represents the patterns of contacts in the fold. It is known that the contact map can be decomposed into stacks and queues. RNA secondary structures are special stacks in which the degree of…
We consider the problem of enumeration of planar maps and revisit its one-matrix model solution in the light of recent combinatorial techniques involving conjugated trees. We adapt and generalize these techniques so as to give an…
In this paper, a natural bijection between multichains of binary paths and shifted tableaux is presented, and it is used for the enumeration of the chains with maximum length from a given path $P$ to the maximum path $\mathbf{1}_{|P|}$. By…
Interacting RNA complexes are studied via bicellular maps using a filtration via their topological genus. Our main result is a new bijection for RNA-RNA interaction structures and linear time uniform sampling algorithm for RNA complexes of…
A contact map is a simple representation of the structure of proteins and other chain-like macromolecules. This representation is quite amenable to numerical studies of folding. We show that the number of contact maps corresponding to the…
We present refined enumeration formulas for lattice paths in $\mathbb{Z}^2$ with two kinds of steps, by keeping track of the number of descents (i.e., turns in a given direction), the major index (i.e., the sum of the positions of the…
It is well known that the set of $m$-Dyck paths with a fixed height and a fixed amount of valleys is counted by the Fu{\ss}-Narayana numbers. In this article, we consider the set of $m$-Dyck paths that start with at least $t$ north steps.…
This thesis deals with the enumerative study of combinatorial maps, and its application to the enumeration of other combinatorial objects. Combinatorial maps, or simply maps, form a rich combinatorial model. They have an intuitive and…
RNA molecules are known to form complex secondary structures including pseudoknots. A systematic framework for the enumeration, classification and prediction of secondary structures is critical to determine the biological significance of…
Given a coprime pair $(m,n)$ of positive integers, rational Catalan numbers $\frac{1}{m+n} \binom{m+n}{m,n}$ counts two combinatorial objects:rational $(m,n)$-Dyck paths are lattice paths in the $m\times n$ rectangle that never go below the…
In this article, we provide a bijection between the set of inversion sequences avoiding the pattern 102 and the set of 2-Schr\"{o}der paths having neither peaks nor valleys and ending with a diagonal step. To achieve this, we introduce two…
In this paper, we study the combinatorial set of RNA secondary structures of length $n$ with $m$ base-pairs. For a compact representation, we encode an RNA secondary structure by the corresponding Motzkin word. For this combinatorial set,…
The problem of map enumeration concerns counting connected spatial graphs, with a specified number $j$ of vertices, that can be embedded in a compact surface of genus $g$ in such a way that its complement yields a cellular decomposition of…
We solve two problems regarding the enumeration of lattice paths in $\mathbb{Z}^2$ with steps $(1,1)$ and $(1,-1)$ with respect to the major index, defined as the sum of the positions of the valleys, and to the number of certain crossings.…
We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that…
We prove new bijections between different variants of Dyck paths and integer compositions, which give combinatorial explanations of their simple counting formula $4^{n-1}$. These give relations between different statistics, such as the…
We give bijective results between several variants of lattice paths of length $2n$ (or $2n-2$) and integer compositions of n, all enumerated by the seemingly innocuous formula $4^{n-1}$. These associations lead us to make new connections…
We introduce a notion of Dyck paths with coloured ascents. For several ways of colouring, we establish bijections between sets of such paths and other combinatorial structures, such as non-crossing trees, dissections of a convex polygon,…
The enumeration of linear $\lambda$-terms has attracted quite some attention recently, partly due to their link to combinatorial maps. Zeilberger and Giorgetti (2015) gave a recursive bijection between planar linear normal $\lambda$-terms…