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Deep learning models have achieved remarkable success across various domains, yet their learned representations and decision-making processes remain largely opaque and hard to interpret. This work introduces HOLE (Homological Observation of…

Machine Learning · Computer Science 2026-04-08 Sudhanva Manjunath Athreya , Paul Rosen

Deep learning models have gained increasing adoption in medical image analysis. However, these models often produce overconfident predictions, which can compromise clinical accuracy and reliability. Bridging the gap between high-performance…

Image and Video Processing · Electrical Eng. & Systems 2026-03-24 Jutika Borah , Hidam Kumarjit Singh

Novelty detection is the task of recognizing samples that do not belong to the distribution of the target class. During training, the novelty class is absent, preventing the use of traditional classification approaches. Deep autoencoders…

Computer Vision and Pattern Recognition · Computer Science 2021-11-11 John Taylor Jewell , Vahid Reza Khazaie , Yalda Mohsenzadeh

We present a neural model for representing snippets of code as continuous distributed vectors ("code embeddings"). The main idea is to represent a code snippet as a single fixed-length $\textit{code vector}$, which can be used to predict…

Machine Learning · Computer Science 2018-10-31 Uri Alon , Meital Zilberstein , Omer Levy , Eran Yahav

The mechanism by which odorants are recognized by olfactory receptors remains primarily unresolved. While charge transport is believed to play a significant role, its precise nature is still unclear. Here, we present a novel perspective by…

Chemical Physics · Physics 2025-06-30 Dominik Szczȩśniak , Ewa Drzazga-Szczȩśniak , Sabre Kais

Accurately predicting molecular properties is a challenging but essential task in drug discovery. Recently, many mono-modal deep learning methods have been successfully applied to molecular property prediction. However, the inherent…

Machine Learning · Computer Science 2024-09-16 Xiaohua Lu , Liangxu Xie , Lei Xu , Rongzhi Mao , Shan Chang , Xiaojun Xu

Deep learning is changing many areas in molecular physics, and it has shown great potential to deliver new solutions to challenging molecular modeling problems. Along with this trend arises the increasing demand of expressive and versatile…

Machine Learning · Computer Science 2023-12-27 Jun Zhang , Yao-Kun Lei , Yaqiang Zhou , Yi Isaac Yang , Yi Qin Gao

Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. Generative deep learning models have been used for molecular representation, discovery, and…

Chemical Physics · Physics 2021-02-12 Navid Shervani-Tabar , Nicholas Zabaras

To fully understand the 3D context of a single image, a visual system must be able to segment both the visible and occluded regions of objects, while discerning their occlusion order. Ideally, the system should be able to handle any object…

Computer Vision and Pattern Recognition · Computer Science 2024-05-10 Jiayang Ao , Qiuhong Ke , Krista A. Ehinger

In this paper, we propose a novel Deep Micro-Dictionary Learning and Coding Network (DDLCN). DDLCN has most of the standard deep learning layers (pooling, fully, connected, input/output, etc.) but the main difference is that the fundamental…

Computer Vision and Pattern Recognition · Computer Science 2018-12-27 Hao Tang , Heng Wei , Wei Xiao , Wei Wang , Dan Xu , Yan Yan , Nicu Sebe

Deep-learning and large scale language-image training have produced image object detectors that generalise well to diverse environments and semantic classes. However, single-image object detectors trained on internet data are not optimally…

Robotics · Computer Science 2024-02-07 Nicolas Harvey Chapman , Feras Dayoub , Will Browne , Chris Lehnert

Predicting the perceived intensity of odorants remains a fundamental challenge in sensory science due to the complex, non-linear behavior of their response, as well as the difficulty in correlating molecular structure with human perception.…

In this work, we introduce a novel Deep Learning-based method to perceive the environment of a vehicle based on radar scans while accounting for uncertainties in its predictions. The environment of the host vehicle is segmented into equally…

Machine Learning · Computer Science 2023-06-06 Marco Braun , Moritz Luszek , Jan Siegemund , Kevin Kollek , Anton Kummert

Predicting odor's pleasantness simplifies the evaluation of odors and has the potential to be applied in perfumes and environmental monitoring industry. Classical algorithms for predicting odor's pleasantness generally use a manual feature…

Machine Learning · Computer Science 2019-03-20 Danli Wu , Yu Cheng , Dehan Luo , Kin-Yeung Wong , Kevin Hung , Zhijing Yang

Deep convolutional neural networks have recently achieved state-of-the-art performance on a number of image recognition benchmarks, including the ImageNet Large-Scale Visual Recognition Challenge (ILSVRC-2012). The winning model on the…

Computer Vision and Pattern Recognition · Computer Science 2013-12-10 Dumitru Erhan , Christian Szegedy , Alexander Toshev , Dragomir Anguelov

The simulation of diffusion-based molecular communication systems with absorbing receivers often requires a high computational complexity to produce accurate results. In this work, a new a priori Monte Carlo (APMC) algorithm is proposed to…

Emerging Technologies · Computer Science 2018-03-14 Yiran Wang , Adam Noel , Nan Yang

Deep neural networks are a powerful technique that have found ample applications in several branches of Physics. In this work, we apply machine learning algorithms to a specific problem of Cosmic Ray Physics: the estimation of the muon…

Instrumentation and Methods for Astrophysics · Physics 2019-04-10 A. Guillen , A. Bueno , J. M. Carceller , J. C. Martinez-Velazquez , G. Rubio , C. J. Todero Peixoto , P. Sanchez-Lucas

Many large scale problems in computational fluid dynamics such as uncertainty quantification, Bayesian inversion, data assimilation and PDE constrained optimization are considered very challenging computationally as they require a large…

Computational Physics · Physics 2020-04-22 Kjetil O. Lye , Siddhartha Mishra , Deep Ray

For centuries, scientists have observed nature to understand the laws that govern the physical world. The traditional process of turning observations into physical understanding is slow. Imperfect models are constructed and tested to…

Machine Learning · Computer Science 2023-01-27 M. Giselle Fernández-Godino , Donald D. Lucas , Qingkai Kong

Computational elucidation of membrane protein (MP) structures is challenging partially due to lack of sufficient solved structures for homology modeling. Here we describe a high-throughput deep transfer learning method that first predicts…

Biomolecules · Quantitative Biology 2017-08-29 Sheng Wang , Zhen Li , Yizhou Yu , Jinbo Xu