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Shape information is a strong and valuable prior in segmenting organs in medical images. However, most current deep learning based segmentation algorithms have not taken shape information into consideration, which can lead to bias towards…

Computer Vision and Pattern Recognition · Computer Science 2022-07-07 Yuan Yao , Fengze Liu , Zongwei Zhou , Yan Wang , Wei Shen , Alan Yuille , Yongyi Lu

We propose a new method, Patch-CNN, for diffusion tensor (DT) estimation from only six-direction diffusion weighted images (DWI). Deep learning-based methods have been recently proposed for dMRI parameter estimation, using either voxel-wise…

Computer Vision and Pattern Recognition · Computer Science 2023-07-06 Tobias Goodwin-Allcock , Ting Gong , Robert Gray , Parashkev Nachev , Hui Zhang

Kinetic modeling enables \textit{in vivo} quantification of tracer uptake and glucose metabolism in [${}^{18}$F]Fluorodeoxyglucose ([${}^{18}$F]FDG) dynamic positron emission tomography (dPET) imaging of mice. However, kinetic modeling…

Quantitative Methods · Quantitative Biology 2025-10-27 Christian Salomonsen , Kristoffer K. Wickstrøm , Samuel Kuttner , Elisabeth Wetzer

Visual place recognition (VPR) using deep networks has achieved state-of-the-art performance. However, most of them require a training set with ground truth sensor poses to obtain positive and negative samples of each observation's spatial…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Chao Chen , Zegang Cheng , Xinhao Liu , Yiming Li , Li Ding , Ruoyu Wang , Chen Feng

Fast-speed and high-accuracy three-dimensional (3D) shape measurement has been the goal all along in fringe projection profilometry (FPP). The dual-frequency temporal phase unwrapping method (DF-TPU) is one of the prominent technologies to…

Image and Video Processing · Electrical Eng. & Systems 2023-05-31 Xiaomin Gao , Wanzhong Song , Chunqian Tan , Junzhe Lei

Typical Convolutional Neural Networks (ConvNets) depend heavily on large amounts of image data and resort to an iterative optimization algorithm (e.g., SGD or Adam) to learn network parameters, which makes training very time- and…

Computer Vision and Pattern Recognition · Computer Science 2024-08-12 Shiye Wang , Kaituo Feng , Changsheng Li , Ye Yuan , Guoren Wang

Patient motion during PET is inevitable. Its long acquisition time not only increases the motion and the associated artifacts but also the patient's discomfort, thus PET acceleration is desirable. However, accelerating PET acquisition will…

Image and Video Processing · Electrical Eng. & Systems 2023-02-15 Bo Zhou , Yu-Jung Tsai , Jiazhen Zhang , Xueqi Guo , Huidong Xie , Xiongchao Chen , Tianshun Miao , Yihuan Lu , James S. Duncan , Chi Liu

Positron emission tomography (PET) is a critical tool for diagnosing tumors and neurological disorders but poses radiation risks to patients, particularly to sensitive populations. While reducing injected radiation dose mitigates this risk,…

Image and Video Processing · Electrical Eng. & Systems 2026-04-01 Yucun Hou , Fenglin Zhan , Xin Cheng , Chenxi Li , Ziquan Yuan , Runze Liao , Haihao Wang , Jianlang Hua , Jing Wu , Jianyong Jiang

In this work, we propose two novel methodologies to study temporal and morphological phenotypic effects caused by different experimental conditions using imaging data. As a proof of concept, we apply them to analyze drug effects in 2D…

Quantitative Methods · Quantitative Biology 2022-03-10 Andrei Dmitrenko , Mauro M. Masiero , Nicola Zamboni

Cryo-electron tomography (Cryo-ET) is a powerful tool in structural biology for 3D visualization of cells and biological systems at resolutions sufficient to identify individual proteins in situ. The measurements are collected by tilting…

Signal Processing · Electrical Eng. & Systems 2025-09-03 Vinith Kishore , Valentin Debarnot , AmirEhsan Khorashadizadeh , Ivan Dokmanić

Self-supervised learning methods have witnessed a recent surge of interest after proving successful in multiple application fields. In this work, we leverage these techniques, and we propose 3D versions for five different self-supervised…

Computer Vision and Pattern Recognition · Computer Science 2020-11-03 Aiham Taleb , Winfried Loetzsch , Noel Danz , Julius Severin , Thomas Gaertner , Benjamin Bergner , Christoph Lippert

Remote photoplethysmography (rPPG) based physiological measurement has great application values in affective computing, non-contact health monitoring, telehealth monitoring, etc, which has become increasingly important especially during the…

Human-Computer Interaction · Computer Science 2022-06-22 Yuhang Dong , Gongping Yang , Yilong Yin

Pedestrian trajectory prediction is a critical technology in the evolution of self-driving cars toward complete artificial intelligence. Over recent years, focusing on the trajectories of pedestrians to model their social interactions has…

Computer Vision and Pattern Recognition · Computer Science 2025-01-15 Jiajia Xie , Sheng Zhang , Beihao Xia , Zhu Xiao , Hongbo Jiang , Siwang Zhou , Zheng Qin , Hongyang Chen

Solving partial differential equations (PDEs) serves as a cornerstone for modeling complex dynamical systems. Recent progresses have demonstrated grand benefits of data-driven neural-based models for predicting spatiotemporal dynamics…

Machine Learning · Computer Science 2025-03-04 Bocheng Zeng , Qi Wang , Mengtao Yan , Yang Liu , Ruizhi Chengze , Yi Zhang , Hongsheng Liu , Zidong Wang , Hao Sun

Purpose: Development of a fast and fully automated deep learning pipeline (FatSegNet) to accurately identify, segment, and quantify abdominal adipose tissue on Dixon MRI from the Rhineland Study - a large prospective population-based study.…

Computer Vision and Pattern Recognition · Computer Science 2019-11-06 Santiago Estrada , Ran Lu , Sailesh Conjeti , Ximena Orozco-Ruiz , Joana Panos-Willuhn , Monique M. B Breteler , Martin Reuter

Automated pathology segmentation remains a valuable diagnostic tool in clinical practice. However, collecting training data is challenging. Semi-supervised approaches by combining labelled and unlabelled data can offer a solution to data…

Image and Video Processing · Electrical Eng. & Systems 2020-09-09 Haochuan Jiang , Agisilaos Chartsias , Xinheng Zhang , Giorgos Papanastasiou , Scott Semple , Mark Dweck , David Semple , Rohan Dharmakumar , Sotirios A. Tsaftaris

In this work, we propose an unsupervised domain adaptation (UDA) framework for 3D volumetric lesion detection that adapts a detector trained on labeled FDG PET/CT to unlabeled PSMA PET/CT. Beyond covariate shift, cross tracer adaptation…

Image and Video Processing · Electrical Eng. & Systems 2026-03-17 Xiaofeng Liu , Menghua Xia , Yanis Chemli , Georges El Fakhri , Chi Liu , Jinsong Ouyang

Physiologically based pharmacokinetic (PBPK) models provide a mechanistic framework for simulating radiopharmaceutical kinetics and estimating patient-specific absorbed doses (ADs). PBPK models incorporate prior knowledge of patient…

Medical Physics · Physics 2025-10-29 Nouran R. R. Zaid , Deni Hardiansyah , Tahir Yusufaly , Arman Rahmim

In oncology, Positron Emission Tomography imaging is widely used in diagnostics of cancer metastases, in monitoring of progress in course of the cancer treatment, and in planning radiotherapeutic interventions. Accurate and reproducible…

Computer Vision and Pattern Recognition · Computer Science 2016-11-01 Jakub Czakon , Filip Drapejkowski , Grzegorz Zurek , Piotr Giedziun , Jacek Zebrowski , Witold Dyrka

Introduction: Quantification of dynamic contrast-enhanced (DCE)-MRI has the potential to provide valuable clinical information, but robust pharmacokinetic modeling remains a challenge for clinical adoption. Methods: A 7-layer neural network…

Medical Physics · Physics 2024-05-22 Ouri Cohen , Soudabeh Kargar , Sungmin Woo , Alberto Vargas , Ricardo Otazo