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We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space. Differentiating species from genomic sequences (i.e., DNA…
We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant…
Tracking all nuclei of an embryo in noisy and dense fluorescence microscopy data is a challenging task. We build upon a recent method for nuclei tracking that combines weakly-supervised learning from a small set of nuclei center point…
Insect pests continue to bring a serious threat to crop yields around the world, and traditional methods for monitoring them are often slow, manual, and difficult to scale. In recent years, deep learning has emerged as a powerful solution,…
This is a photographic dataset collected for testing image processing algorithms. The idea is to have sets of different but statistically similar images. In this work the images show randomly distributed peppercorns. The dataset is made…
Recent advances in deep learning have enabled the development of automated frameworks for analysing medical images and signals, including analysis of cervical cancer. Many previous works focus on the analysis of isolated cervical cells, or…
This paper proposes a novel selective autoencoder approach within the framework of deep convolutional networks. The crux of the idea is to train a deep convolutional autoencoder to suppress undesired parts of an image frame while allowing…
Remote individual animal identification is important for food safety, sport, and animal conservation. Numerous existing remote individual animal identification studies have focused on RGB images. In this paper, we tackle individual penguin…
An original dataset for semantic segmentation, Ciona17, is introduced, which to the best of the authors' knowledge, is the first dataset of its kind with pixel-level annotations pertaining to invasive species in a marine environment.…
In today world of enormous amounts of data, it is very important to extract useful knowledge from it. This can be accomplished by feature subset selection. Feature subset selection is a method of selecting a minimum number of features with…
The development of deep segmentation models for computational pathology (CPath) can help foster the investigation of interpretable morphological biomarkers. Yet, there is a major bottleneck in the success of such approaches because…
The D-Egg, an acronym for ``Dual optical sensors in an Ellipsoid Glass for Gen2,'' is one of the optical modules designed for future extensions of the IceCube experiment at the South Pole. The D-Egg has an elongated-sphere shape to maximize…
The task of clustering a set of objects based on multiple sources of data arises in several modern applications. We propose an integrative statistical model that permits a separate clustering of the objects for each data source. These…
This research recasts the network attack dataset from UNSW-NB15 as an intrusion detection problem in image space. Using one-hot-encodings, the resulting grayscale thumbnails provide a quarter-million examples for deep learning algorithms.…
Individual identification plays a pivotal role in ecology and ethology, notably as a tool for complex social structures understanding. However, traditional identification methods often involve invasive physical tags and can prove both…
The early identification of diseases in cocoa pods is an important task to guarantee the production of high-quality cocoa. The use of artificial intelligence techniques such as machine learning, computer vision and deep learning are…
Catching objects in-flight is an outstanding challenge in robotics. In this paper, we present a closed-loop control system fusing data from two sensor modalities: an RGB-D camera and a radar. To develop and test our method, we start with an…
Cervical cancer, the fourth leading cause of cancer in women globally, requires early detection through Pap smear tests to identify precancerous changes and prevent disease progression. In this study, we performed a focused analysis by…
Deep learning models are prone to learning shortcut solutions to problems using spuriously correlated yet irrelevant features of their training data. In high-risk applications such as medical image analysis, this phenomenon may prevent…
With Polycystic Kidney Disease (PKD) potentially leading to fatal complications in patients due to the formation of cysts in kidneys, early detection of PKD is crucial for effective management of the condition. However, the various…