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Time series are ubiquitous in domains ranging from medicine to marketing and finance. Frequent Pattern Mining (FPM) from a time series has thus received much attention. Recently, it has been studied under the order-preserving (OP) matching…

We present an $O(n^2)$-time algorithm to test whether an $n$-vertex directed partial $2$-tree is upward planar. This result improves upon the previously best known algorithm, which runs in $O(n^4)$ time.

We present an algorithm for building probabilistic rule lists that is two orders of magnitude faster than previous work. Rule list algorithms are competitors for decision tree algorithms. They are associative classifiers, in that they are…

In this paper we propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks (causal trees and polytrees). In the conventional algorithms, new evidence in absorbed in time…

XML document markup is highly repetitive and therefore well compressible using dictionary-based methods such as DAGs or grammars. In the context of selectivity estimation, grammar-compressed trees were used before as synopsis for structural…

We tackle the problem of the randomized generation of slowly synchronizing deterministic automata (DFAs) by generating random primitive sets of matrices. We show that when the randomized procedure is too simple the exponent of the generated…

Let PT-DFA mean a deterministic finite automaton whose transition relation is a partial function. We present an algorithm for minimizing a PT-DFA in $O(m \lg n)$ time and $O(m+n+\alpha)$ memory, where $n$ is the number of states, $m$ is the…

Blocking flows, introduced by Dinic [2] for network flow, have been used to speed up many augmenting-path type algorithms, especially matching algorithms e.g., [18, 23, 16]. We present an $O(m)$ time algorithm for blocking trails for…

Traditionally, we usually utilize the method of shotgun to cut a DNA sequence into pieces and we have to reconstruct the original DNA sequence from the pieces, those are widely used method for DNA assembly. Emerging DNA sequence…

The problem of space-efficient depth-first search (DFS) is reconsidered. A particularly simple and fast algorithm is presented that, on a directed or undirected input graph $G=(V,E)$ with $n$ vertices and $m$ edges, carries out a DFS in…

Depth first search is a fundamental graph problem having a wide range of applications. For a graph $G=(V,E)$ having $n$ vertices and $m$ edges, the DFS tree can be computed in $O(m+n)$ using $O(m)$ space where $m=O(n^2)$. In the streaming…

Let $A$ be a static array storing $n$ elements from a totally ordered set. We present a data structure of optimal size at most $n\log_2(3+2\sqrt{2})+o(n)$ bits that allows us to answer the following queries on $A$ in constant time, without…

Inspired by [4] we present a new algorithm for uniformly random generation of ordered trees in which all occuring outdegrees can be specified by a given sequence of numbers. The method can be used for random generation of binary or n-ary…

Two strings $x$ and $y$ over $\Sigma \cup \Pi$ of equal length are said to \emph{parameterized match} (\emph{p-match}) if there is a renaming bijection $f:\Sigma \cup \Pi \rightarrow \Sigma \cup \Pi$ that is identity on $\Sigma$ and…

Let $G=(V, E)$ be an undirected $n$-vertices $m$-edges graph with non-negative edge weights. In this paper, we present three new algorithms for constructing a $(2k-1)$-stretch distance oracle with $O(n^{1+\frac{1}{k}})$ space. The first…

In the classic longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, over an alphabet of size $\sigma$, and we are asked to find a longest string occurring as a fragment of both $S$ and…

Succinct data structures give space-efficient representations of large amounts of data without sacrificing performance. They rely one cleverly designed data representations and algorithms. We present here the formalization in Coq/SSReflect…

Karger (STOC 1995) gave the first FPTAS for the network (un)reliability problem, setting in motion research over the next three decades that obtained increasingly faster running times, eventually leading to a $\tilde{O}(n^2)$-time algorithm…

Existing parallel algorithms for wavelet tree construction have a work complexity of $O(n\log\sigma)$. This paper presents parallel algorithms for the problem with improved work complexity. Our first algorithm is based on parallel integer…

Motivated by classic tree algorithms, in 1995 we designed a bottom-up $O(n)$ algorithm to compute the determinant of a tree's adjacency matrix $A$. In 2010 an $O(n)$ algorithm was found for constructing a diagonal matrix congruent to $A +…