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Presence-only data, point locations where a species has been recorded as being present, are often used in modeling the distribution of a species as a function of a set of explanatory variables---whether to map species occurrence, to…

Applications · Statistics 2010-11-16 David I. Warton , Leah C. Shepherd

Animal learning has interested ecologists and psychologists for over a century. Mathematical models that explain how animals store and recall information have gained attention recently. Central to this work is statistical decision theory…

Quantitative Methods · Quantitative Biology 2022-08-29 Peter R. Thompson , Melodie Kunegel-Lion , Mark A. Lewis

Species distribution modeling plays an important role in estimating the habitat suitability of species using environmental variables. For this purpose, Maxent and the Poisson point process are popular and powerful methods extensively…

Methodology · Statistics 2024-05-24 Osamu Komori , Yusuke Saigusa , Shinto Eguchi , Yasuhiro Kubota

In many applications in biology, engineering and economics, identifying similarities and differences between distributions of data from complex processes requires comparing finite categorical samples of discrete counts. Statistical…

Methodology · Statistics 2023-07-11 Francesco Camaglia , Ilya Nemenman , Thierry Mora , Aleksandra M. Walczak

Feature selection procedures for spatial point processes parametric intensity estimation have been recently developed since more and more applications involve a large number of covariates. In this paper, we investigate the setting where the…

Methodology · Statistics 2017-12-29 Achmad Choiruddin , Jean-François Coeurjolly , Frédérique Letué

In ecology we may find scenarios where the same phenomenon (species occurrence, species abundance, etc.) is observed using two different types of samplers. For instance, species data can be collected from scientific sampling with a…

The Poisson multinomial distribution (PMD) describes the distribution of the sum of $n$ independent but non-identically distributed random vectors, in which each random vector is of length $m$ with 0/1 valued elements and only one of its…

Computation · Statistics 2022-01-13 Zhengzhi Lin , Yueyao Wang , Yili Hong

Multitype branching processes with immigration in one type are used to model the dynamics of stage-structured plant populations. Parametric inference is first carried out when count data of all types are observed. Statistical…

Applications · Statistics 2009-02-27 Catherine Laredo , Olivier David , Aurélie Garnier

Species distribution modeling is a highly versatile tool for understanding the intricate relationship between environmental conditions and species occurrences. However, the available data often lacks information on confirmed species absence…

Quantitative Methods · Quantitative Biology 2024-06-18 Robin Zbinden , Nina van Tiel , Benjamin Kellenberger , Lloyd Hughes , Devis Tuia

One of the first beings affected by changes in the climate are trees, one of our most vital resources. In this study tree species interaction and the response to climate in different ecological environments is observed by applying a joint…

Populations and Evolution · Quantitative Biology 2019-10-14 Hyun Choi , Ali Sadeghian , Sergio Marconi , Ethan White , Daisy Zhe Wang

Understanding the relative contributions of environmental, spatial, and temporal processes in shaping species distribution is a central objective in ecology. Bayesian species distribution models (SDMs) offer a flexible framework for this…

Applications · Statistics 2026-03-11 Luisa Ferrari , Massimo Ventrucci , Alex Laini

In an effort to effectively model observed patterns in the spatial configuration of individuals of multiple species in nature, we introduce the saturated pairwise interaction Gibbs point process. Its main strength lies in its ability to…

Methodology · Statistics 2023-02-27 Ian Flint , Nick Golding , Peter Vesk , Yan Wang , Aihua Xia

Most mechanistic predator-prey modelling has involved either parameterization from process rate data or inverse modelling. Here, we take a median road: we aim at identifying the potential benefits of combining datasets, when both population…

Populations and Evolution · Quantitative Biology 2021-02-11 Frederic Barraquand , Olivier Gimenez

Consider the random Dirichlet partition of the interval into $n$ fragments with parameter $\theta >0$. We recall the unordered Ewens sampling formulae from finite Dirichlet partitions. As this is a key variable for estimation purposes,…

Methodology · Statistics 2008-09-25 Thierry Huillet , Christian Paroissin

Source-sink systems are metapopulations of habitat patches with different, and possibly temporally varying, habitat qualities, which are commonly used in ecology to study the fate of spatially extended natural populations. We propose new…

Probability · Mathematics 2012-10-18 Vincent Bansaye , Amaury Lambert

This study compares the predictive capacity of the Dynamic Habitat Index (DHI) - a remote sensing (RS)-based measure of habitat productivity and variability - against traditional land-use/land-cover (LULC) metrics in species distribution…

Quantitative Methods · Quantitative Biology 2025-09-19 Maïri Souza Oliveira , Clémentine Préau , Samuel Alleaume , Maxime Lenormand , Sandra Luque

In this paper, we compare the performance of two methods for estimating Bayesian networks from data containing exogenous variables and random effects. The first method is fully Bayesian in which a prior distribution is placed on the…

Methodology · Statistics 2011-12-02 Jessica Kasza , Patty Solomon

It has been argued persuasively that, in order to evaluate climate models, the probability distributions of model output need to be compared to the corresponding empirical distributions of observed data. Distance measures between…

Methodology · Statistics 2013-07-17 Thordis L. Thorarinsdottir , Tilmann Gneiting , Nadine Gissibl

Density-based directed distances -- particularly known as divergences -- between probability distributions are widely used in statistics as well as in the adjacent research fields of information theory, artificial intelligence and machine…

Statistics Theory · Mathematics 2022-03-03 Michel Broniatowski , Wolfgang Stummer

We address an important problem in ecology called Species Distribution Modeling (SDM), whose goal is to predict whether a species exists at a certain position on Earth. In particular, we tackle a challenging version of this task, where we…

Machine Learning · Computer Science 2024-10-24 Shiran Yuan , Hao Zhao