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Models of the spatial distribution of animals provide useful tools to help ecologists quantify species-environment relationships, and they are increasingly being used to help determine the impacts of climate and habitat changes on species.…

Methodology · Statistics 2020-09-04 Joe Watson , Ruth Joy , Dominic Tollit , Sheila J Thornton , Marie Auger-Méthé

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Populations and Evolution · Quantitative Biology 2026-04-30 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Simon A. Levin , Andrea Rinaldo , Amos Maritan

In fisheries ecology, species abundance data are often collected by multiple surveys, each with unique characteristics. This article is motivated by a dataset of Atlantic sea scallop abundance records along the northeast coast of the United…

Applications · Statistics 2026-04-03 Quan Vu , Francis K. C. Hui , A. H. Welsh , Samuel Muller , Eva Cantoni , Christopher R. Haak

Habitat loss is one of the biggest threats facing plant species nowadays. We formulate a simple mathematical model of seed dispersal on reduced habitats to discuss survival of the species in relation to the habitat size and seeds production…

Probability · Mathematics 2023-05-24 Cristian F. Coletti , Nevena Marić , Pablo M. Rodriguez

This paper describes a cascading multimodal pipeline for high-resolution biodiversity mapping across Europe, integrating species distribution modeling, biodiversity indicators, and habitat classification. The proposed pipeline first…

Artificial Intelligence · Computer Science 2025-04-08 César Leblanc , Lukas Picek , Benjamin Deneu , Pierre Bonnet , Maximilien Servajean , Rémi Palard , Alexis Joly

Monitoring species distribution is vital for conservation efforts, enabling the assessment of environmental impacts and the development of effective preservation strategies. Traditional data collection methods, including citizen science,…

Machine Learning · Computer Science 2025-10-23 Chirag Padubidri , Pranesh Velmurugan , Andreas Lanitis , Andreas Kamilaris

The quantity and types of biodiversity data being collected have increased in recent years. If we are to model and monitor biodiversity effectively, we need to respect how different data sets were collected, and effectively integrate these…

1. Joint species distribution models (JSDMs) have gained considerable traction among ecologists over the past decade, due to their capacity to answer a wide range of questions at both the species- and the community-level. The family of…

Methodology · Statistics 2024-03-19 Pekka Korhonen , Francis K. C. Hui , Jenni Niku , Sara Taskinen , Bert van der Veen

Species distribution models usually attempt to explain presence-absence or abundance of a species at a site in terms of the environmental features (socalled abiotic features) present at the site. Historically, such models have considered…

Methodology · Statistics 2018-09-25 Shinichiro Shirota , Alan E. Gelfand , Sudipto Banerjee

Biodiversity is declining at an unprecedented rate, impacting ecosystem services necessary to ensure food, water, and human health and well-being. Understanding the distribution of species and their habitats is crucial for conservation…

Understanding how species are distributed across landscapes over time is a fundamental question in biodiversity research. Unfortunately, most species distribution models only target a single species at a time, despite strong ecological…

Machine Learning · Computer Science 2017-02-22 Di Chen , Yexiang Xue , Shuo Chen , Daniel Fink , Carla Gomes

Understanding species-habitat associations is fundamental to ecological sciences and for species conservation. Consequently, various statistical approaches have been designed to infer species-habitat associations. Due to their conceptual…

Joint species distribution models are popular in ecology for modeling covariate effects on species occurrence, while characterizing cross-species dependence. Data consist of multivariate binary indicators of the occurrences of different…

Methodology · Statistics 2025-07-08 Federica Stolf , David B. Dunson

Optimum designs for parameter estimation in generalized regression models are standardly based on the Fisher information matrix (cf. Atkinson et al (2014) for a recent exposition). The corresponding optimality criteria are related to the…

Statistics Theory · Mathematics 2015-07-28 Katarína Burclová , Andrej Pázman

Determining spatial distributions of species and communities are key objectives of ecology and conservation. Joint species distribution models use multi-species detection-nondetection data to estimate species and community distributions.…

Applications · Statistics 2022-12-15 Jeffrey W. Doser , Andrew O. Finley , Sudipto Banerjee

The ubiquity of integrating detectors in imaging and other applications implies that a variety of real-world data are well modeled as Poisson random variables whose means are in turn proportional to an underlying vector-valued signal of…

Methodology · Statistics 2012-10-15 Keigo Hirakawa , Patrick J. Wolfe

1. Joint Species Distribution models (JSDMs) explain spatial variation in community composition by contributions of the environment, biotic associations, and possibly spatially structured residual covariance. They show great promise as a…

Quantitative Methods · Quantitative Biology 2023-03-28 Maximilian Pichler , Florian Hartig

Continuous space species distribution models (SDMs) have a long-standing history as a valuable tool in ecological statistical analysis. Geostatistical and preferential models are both common models in ecology. Geostatistical models are…

Applications · Statistics 2023-07-17 Mario Figueira , David Conesa , Antonio López-Quílez , Iosu Paradinas

Accurate biodiversity monitoring is essential for effective environmental policy, yet current practices often rely on arbitrarily defined ecosystems, communities, and ad-hoc indicator species, limiting cost-efficiency and reproducibility.…

Applications · Statistics 2025-12-02 Braden Scherting , Otso Ovaskainen , Tomas Roslin , David B. Dunson

In cognition, response times and choices in decision-making tasks are commonly modeled using Drift Diffusion Models (DDMs), which describe the accumulation of evidence for a decision as a stochastic process, specifically a Brownian motion,…

Machine Learning · Computer Science 2025-06-12 Sophie Jaffard , Giulia Mezzadri , Patricia Reynaud-Bouret , Etienne Tanré