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Graph neural networks are increasingly becoming the go-to approach in various fields such as computer vision, computational biology and chemistry, where data are naturally explained by graphs. However, unlike traditional convolutional…

Machine Learning · Computer Science 2021-10-28 Moshe Eliasof , Eldad Haber , Eran Treister

Terrorism instills fear in the minds of people and takes away the freedom of individuals to act as they will. Terrorism has turned out to be an international menace today. Here, we study the terrorist attack incidents which occurred in the…

Physics and Society · Physics 2019-10-22 Syed Shariq Husain , Kiran Sharma , Vishwas Kukreti , Anirban Chakraborti

Many real-world networks such as social networks consist of strategic agents. The topology of these networks often plays a crucial role in determining the ease and speed with which certain information driven tasks can be accomplished.…

Social and Information Networks · Computer Science 2017-07-03 Swapnil Dhamal , Y. Narahari

Missing link prediction in indirected and un-weighted network is an open and challenge problem which has been studied intensively in recent years. In this paper, we studied the relationships between community structure and link formation…

Social and Information Networks · Computer Science 2013-03-07 Zhen Liu , Jia-Lin He , Jaideep Srivastava

Cognitive function is driven by dynamic interactions between large-scale neural circuits or networks, enabling behavior. Fundamental principles constraining these dynamic network processes have remained elusive. Here we use network control…

Neurons and Cognition · Quantitative Biology 2015-10-28 Shi Gu , Fabio Pasqualetti , Matthew Cieslak , Scott T. Grafton , Danielle S. Bassett

The rise in complexity of network data in neuroscience, social networks, and protein-protein interaction networks has been accompanied by several efforts to model and understand these data at different scales. A key multiscale network…

Methodology · Statistics 2025-03-04 Al-Fahad Al-Qadhi , Keith Levin , Vincent Lyzinski

The identification of motifs--subgraphs that appear significantly more often in a particular network than in an ensemble of randomized networks--has become a ubiquitous method for uncovering potentially important subunits within networks…

Molecular Networks · Quantitative Biology 2010-08-27 Reid Ginoza , Andrew Mugler

Molecular networks guide the biochemistry of a living cell on multiple levels: its metabolic and signalling pathways are shaped by the network of interacting proteins, whose production, in turn, is controlled by the genetic regulatory…

Soft Condensed Matter · Physics 2009-11-07 Sergei Maslov , Kim Sneppen

We investigate the problem of producing structured graph representations of visual scenes. Our work analyzes the role of motifs: regularly appearing substructures in scene graphs. We present new quantitative insights on such repeated…

Computer Vision and Pattern Recognition · Computer Science 2018-03-30 Rowan Zellers , Mark Yatskar , Sam Thomson , Yejin Choi

Networked nonlinear systems present a variety of emergent phenomena as a result of the mutual interactions between their units. An interesting feature of these systems is the presence of stable periodic behavior even when each unit…

Adaptation and Self-Organizing Systems · Physics 2022-06-01 Leonard Hallier , Everton S. Medeiros , Antonio Mihara , Rene O. Medrano-T , Anna Zakharova

In signed networks, some existing community detection methods treat negative connections as intercommunity links and positive ones as intracommunity links. However, it is important to recognize that negative links on real-world networks…

Physics and Society · Physics 2023-08-17 Peng Zhang , Xianyu Xu , Leyang Xue

One of the most central questions in network science is: which nodes are most important? Often this question is answered using structural properties such as high connectedness or centrality in the network. However, static structural…

Physics and Society · Physics 2021-07-02 Casper van Elteren , Rick Quax , Peter Sloot

Random boolean networks are a model of genetic regulatory networks that has proven able to describe experimental data in biology. They not only reproduce important phenomena in cell dynamics, but they are also extremely interesting from a…

Dynamical Systems · Mathematics 2015-02-26 Marco Villani , Davide Campioli , Chiara Damiani , Andrea Roli , Alessandro Filisetti , Roberto Serra

The community structure and motif-modular-network hierarchy are of great importance for understanding the relationship between structures and functions. In this paper, we investigate the distribution of clique-degree, which is an extension…

Physics and Society · Physics 2009-11-11 Wei-Ke Xiao , Jie Ren , Qi Feng , Zhi-Wei Song , Meng-Xiao Zhu , Hong-Feng Yang , Hui-Yu Jin , Bing-Hong Wang , Tao Zhou

Complex systems are often modeled as Boolean networks in attempts to capture their logical structure and reveal its dynamical consequences. Approximating the dynamics of continuous variables by discrete values and Boolean logic gates may,…

Molecular Networks · Quantitative Biology 2013-05-29 Johannes Norrell , Joshua E. S. Socolar

A new probabilistic network construction system, DYNASTY, is proposed for diagnostic reasoning given variables whose probabilities change over time. Diagnostic reasoning is formulated as a sequential stochastic process, and is modeled using…

Artificial Intelligence · Computer Science 2013-03-26 Gregory M. Provan

The biological processes of cellular decision making and differentiation involve a plethora of signalling pathways and gene regulatory circuits. These networks, in their turn, exhibit a multitude of motifs playing crucial parts in…

Molecular Networks · Quantitative Biology 2018-05-02 Gustavo Rodrigues Ferreira , Helder Imoto Nakaya , Luciano da Fontoura Costa

Discrete-time regulatory networks are dynamical systems on directed graphs, with a structure inspired on natural systems of interacting units. There is a natural notion of determination amongst vertices, which we use to classify the nodes…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 Beatriz Luna , Edgardo Ugalde

In the last decade, network science has shed new light both on the structural (anatomical) and on the functional (correlations in the activity) connectivity among the different areas of the human brain. The analysis of brain networks has…

Physics and Society · Physics 2017-04-18 Federico Battiston , Vincenzo Nicosia , Mario Chavez , Vito Latora

Recent years have seen a surge of interest in the analysis of complex networks, facilitated by the availability of relational data and the increasingly powerful computational resources that can be employed for their analysis. Naturally, the…

Physics and Society · Physics 2013-08-08 Jean-Charles Delvenne , Michael T. Schaub , Sophia N. Yaliraki , Mauricio Barahona