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Active centres and hot spots of proteins have a paramount importance in enzyme action, protein complex formation and drug design. Recently a number of publications successfully applied the analysis of residue networks to predict active…

Molecular Networks · Quantitative Biology 2008-11-27 Peter Csermely

Interconnected ensembles of biological entities are perhaps some of the most complex systems that modern science has encountered so far. In particular, scientists have concentrated on understanding how the complexity of the interacting…

Pattern Formation and Solitons · Physics 2020-11-18 Bram A. Siebert , Cameron L. Hall , James P. Gleeson , Malbor Asllani

We consider a dynamic social network model in which agents play repeated games in pairings determined by a stochastically evolving social network. Individual agents begin to interact at random, with the interactions modeled as games. The…

Probability · Mathematics 2007-05-23 Brian Skyrms , Robin Pemantle

As two main focuses of the study of complex networks, the community structure and the dynamics on networks have both attracted much attention in various scientific fields. However, it is still an open question how the community structure is…

Physics and Society · Physics 2010-05-11 Xue-Qi Cheng , Hua-Wei Shen

The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

Recent research has provided a wealth of evidence highlighting the pivotal role of high-order interdependencies in supporting the information-processing capabilities of distributed complex systems. These findings may suggest that high-order…

Adaptation and Self-Organizing Systems · Physics 2023-05-24 Patricio Orio , Pedro A. M. Mediano , Fernando E. Rosas

Key network motifs searching in complex networks is one of the crucial aspects of network analysis. There has been a series of insightful findings and valuable applications for various scenarios through the analysis of network structures.…

Physics and Society · Physics 2024-08-20 Qitong Hu , Xiao-Dong Zhang

An important part of the analysis of bio-molecular networks is to detect different functional units. Different functions are reflected in a different evolutionary dynamics, and hence in different statistical characteristics of network…

Molecular Networks · Quantitative Biology 2007-05-23 Johannes Berg , Michael Lässig

In this study, we performed comprehensive morphological investigations of the spontaneous formations of effective network structures among elements in coupled logistic maps, specifically with a delayed connection change. Our proposed model…

Adaptation and Self-Organizing Systems · Physics 2020-12-02 Amika Ohara , Masashi Fujii , Akinori Awazu

Dynamic networks models describe a growing number of important scientific processes, from cell biology and epidemiology to sociology and finance. There are many aspects of dynamical networks that require statistical considerations. In this…

Methodology · Statistics 2012-05-15 E. C. Wit , A. Abbruzzo

The brain forms and stores distributed representations from sparse external input that compete for neuronal resources with already stored memory traces. It is unclear what dynamical properties of neural systems allow formation and…

Neurons and Cognition · Quantitative Biology 2018-02-08 Quinton M Skilling , Daniel Maruyama , Nicolette Ognjanovski , Sara J Aton , Michal Zochowski

Modularity structures are common in various social and biological networks. However, its dynamical origin remains an open question. In this work, we set up a dynamical model describing the evolution of a social network. Based on the…

Physics and Society · Physics 2011-08-19 Menghui Li , Shuguang Guan , Choy-Heng Lai

The study of dynamical systems on networks, describing complex interactive processes, provides insight into how network structure affects global behaviour. Yet many methods for network dynamics fail to cope with large or partially-known…

Physics and Society · Physics 2018-09-05 Neave O'Clery , Ye Yuan , Guy-Bart Stan , Mauricio Barahona

We explore the coupled dynamics of the internal states of a set of interacting elements and the network of interactions among them. Interactions are modeled by a spatial game and the network of interaction links evolves adapting to the…

Other Condensed Matter · Physics 2007-09-23 Martin G. Zimmermann , Victor M. Eguiluz , Maxi San Miguel

A primary goal of social science research is to understand how latent group memberships predict the dynamic process of network evolution. In the modeling of international militarized conflicts, for instance, scholars hypothesize that…

Applications · Statistics 2021-10-26 Santiago Olivella , Tyler Pratt , Kosuke Imai

We consider the influence of local noise on a generalized network of populations having positive and negative feedbacks. The population dynamics at the nodes is nonlinear, typically chaotic, and allows cessation of activity if the…

Chaotic Dynamics · Physics 2014-12-03 Anshul Choudhary , Vivek Kohar , Sudeshna sinha

Finding the global minimum in complex networks while avoiding local minima is challenging in many types of networks. We study the dynamics of complex human networks and observed that humans have different methods to avoid local minima than…

Physics and Society · Physics 2023-08-15 Elad Schniderman , Yahav Avraham , Shir Shahal , Hamootal Duadi , Nir Davidson , Moti Fridman

Fuelled by a desire for greater connectivity, networked systems now pervade our society at an unprecedented level that will affect it in ways we do not yet understand. In contrast, nature has already developed efficient networks that can…

Social and Information Networks · Computer Science 2019-10-08 Ruaridh Clark , Giuliano Punzo , Malcolm Macdonald

Many natural systems are organized as networks, in which the nodes (be they cells, individuals or populations) interact in a time-dependent fashion. The dynamic behavior of these networks depends on how these nodes are connected, which can…

Neurons and Cognition · Quantitative Biology 2015-06-22 Anca Radulescu , Sergio Verduzco-Flores

Dynamical networks are powerful tools for modeling a broad range of complex systems, including financial markets, brains, and ecosystems. They encode how the basic elements (nodes) of these systems interact altogether (via links) and evolve…

Physics and Society · Physics 2019-03-13 Edward Laurence , Nicolas Doyon , Louis J Dubé , Patrick Desrosiers
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